contig_metadata
35 rows where analysis = "blastn", bioproject = "PRJEB7614" and tax_kingdom = "Pararnavirae"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138650 | 138650 | PRJEB7614_P_NODE_4661_length_195_cov_4.253012_g4594_i0 | PRJEB7614 | 4661 | 195 | 4.253012 | 8.2933734 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 300 | 5.4500000000000004e-77 | NTclustered | gi|14039091|gb|AF219268.1|AF219268 | 11676 | g4594 | i0 | 94.416 | 100.302564102564 | 197 | 8 | 99 | 3 | 1 | 194 | 1711 | 1515 | HIV-1 isolate FIN9257 from Finland vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds | blastn | 19559 | 300 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 138651 | 138651 | PRJEB7614_P_NODE_5561_length_183_cov_1.396104_g5494_i0 | PRJEB7614 | 5561 | 183 | 1.396104 | 2.55487032 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 278 | 2.36e-70 | NTclustered | gi|1625847803|gb|MK384855.1| | 11676 | g5494 | i0 | 93.989 | 100.109289617486 | 183 | 11 | 100 | 0 | 1 | 183 | 2963 | 3145 | HIV-1 isolate 373Pt3-2001-P13G9 from USA defective genome | blastn | 18320 | 278 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 1413336 | 1413336 | PRJEB7614_P_NODE_382_length_412_cov_10.467363_g327_i0 | PRJEB7614 | 382 | 412 | 10.467363 | 43.12553556 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 497 | 4.23e-136 | NTclustered | gi|542125849|gb|KC863138.1| | 11676 | g327 | i0 | 92.507 | 84.6650485436893 | 347 | 26 | 84 | 0 | 66 | 412 | 1571 | 1225 | HIV-1 isolate C059-3A11 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds | blastn | 34882 | 497 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 3964854 | 3964854 | PRJEB7614_P_NODE_9444_length_156_cov_3.055118_g9377_i0 | PRJEB7614 | 9444 | 156 | 3.0551179999999998 | 4.76598408 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 261 | 1.96e-65 | NTclustered | gi|334264977|gb|JF910214.1| | 11676 | g9377 | i0 | 96.795 | 91.8012820512821 | 156 | 5 | 100 | 0 | 1 | 156 | 339 | 184 | HIV-1 isolate P034.8.H3 from Netherlands envelope glycoprotein (env), rev protein (rev), and tat protein (tat) genes, partial cds | blastn | 14321 | 261 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 5241290 | 5241290 | PRJEB7614_P_NODE_10365_length_153_cov_2.362903_g10298_i0 | PRJEB7614 | 10365 | 153 | 2.362903 | 3.61524159 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 250 | 4.14e-62 | NTclustered | gi|87246166|gb|DQ372412.1| | 11676 | g10298 | i0 | 96.667 | 97.7385620915033 | 150 | 5 | 98 | 0 | 1 | 150 | 1591 | 1442 | HIV-1 isolate WC37P-0696-1 from USA pol protein (pol) gene, partial cds | blastn | 14954 | 250 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 9065984 | 9065984 | PRJEB7614_P_NODE_5248_length_187_cov_2.240506_g5181_i0 | PRJEB7614 | 5248 | 187 | 2.240506 | 4.18974622 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 263 | 6.79e-66 | NTclustered | gi|80974560|gb|DQ199156.1| | 11676 | g5181 | i0 | 91.979 | 100.700534759358 | 187 | 15 | 100 | 0 | 1 | 187 | 637 | 451 | HIV-1 isolate TZB0590 from Tanzania envelope glycoprotein (env) gene, partial cds | blastn | 18831 | 263 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 9065985 | 9065985 | PRJEB7614_P_NODE_6668_length_171_cov_2.521127_g6601_i0 | PRJEB7614 | 6668 | 171 | 2.521127 | 4.31112717 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 222 | 1.03e-53 | NTclustered | gi|2687626209|gb|PP337234.1| | 11676 | g6601 | i0 | 90.058 | 100.567251461988 | 171 | 17 | 100 | 0 | 1 | 171 | 1476 | 1306 | HIV-1 isolate D16916.30m.2D4 from Netherlands envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds | blastn | 17197 | 222 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 10341736 | 10341736 | PRJEB7614_P_NODE_749_length_350_cov_15.682243_g686_i0 | PRJEB7614 | 749 | 350 | 15.682243 | 54.8878505 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 617 | 2.6e-172 | NTclustered | gi|60652132|gb|AY835781.1| | 11676 | g686 | i0 | 98.567 | 99.7171428571429 | 349 | 5 | 99 | 0 | 1 | 349 | 1783 | 1435 | HIV-1 isolate 5157-83 clone pbf9 from USA, complete genome | blastn | 34901 | 617 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 12892189 | 12892189 | PRJEB7614_P_NODE_791_length_346_cov_1.403785_g728_i0 | PRJEB7614 | 791 | 346 | 1.403785 | 4.8570961 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 606 | 5.57e-169 | NTclustered | gi|766625800|gb|KJ704789.1| | 11676 | g728 | i0 | 98.266 | 100 | 346 | 6 | 100 | 0 | 1 | 346 | 3044 | 3389 | HIV-1 isolate NYC12 from USA, partial genome | blastn | 34600 | 606 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 14167070 | 14167070 | PRJEB7614_P_NODE_4812_length_193_cov_2.682927_g4745_i0 | PRJEB7614 | 4812 | 193 | 2.682927 | 5.17804911 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 270 | 4.22e-68 | NTclustered | gi|542126164|gb|KC863201.1| | 11676 | g4745 | i0 | 91.837 | 102.113989637306 | 196 | 13 | 100 | 2 | 1 | 193 | 1255 | 1450 | HIV-1 isolate C.ZA.01.Du114-A10 from South Africa envelope glycoprotein (env) gene, complete cds; vpu protein (vpu) and rev protein (rev) genes, partial cds; and nonfunctional tat protein (tat) gene, partial sequence | blastn | 19708 | 270 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 16715383 | 16715383 | PRJEB7614_P_NODE_34_length_839_cov_4.979012_g20_i0 | PRJEB7614 | 34 | 839 | 4.979012 | 41.77391068 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 1229 | 0 | NTclustered | gi|90993399|gb|DQ410256.1| | 11676 | g20 | i0 | 93.214 | 99.6603098927294 | 840 | 49 | 100 | 5 | 1 | 839 | 574 | 1406 | HIV-1 isolate H22v1ed3.2 from USA envelope glycoprotein (env) gene, complete cds | blastn | 83615 | 1229 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 16715387 | 16715387 | PRJEB7614_P_NODE_4814_length_193_cov_2.609756_g4747_i0 | PRJEB7614 | 4814 | 193 | 2.609756 | 5.03682908 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 320 | 4.13e-83 | NTclustered | gi|256252402|dbj|AB485641.1| | 11676 | g4747 | i0 | 96.429 | 101.507772020725 | 196 | 4 | 100 | 1 | 1 | 193 | 6556 | 6361 | Human immunodeficiency virus 1 proviral DNA, complete genome, clone: pPRD320-06B02 | blastn | 19591 | 320 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 17990210 | 17990210 | PRJEB7614_P_NODE_1755_length_273_cov_17.352459_g1688_i0 | PRJEB7614 | 1755 | 273 | 17.352459 | 47.37221307 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 477 | 3.489999999999999e-130 | NTclustered | gi|62637563|gb|AY781126.1| | 11676 | g1688 | i0 | 98.519 | 98.5934065934066 | 270 | 4 | 99 | 0 | 1 | 270 | 642 | 911 | HIV-1 isolate 01UYTRA1092 from Uruguay, complete genome | blastn | 26916 | 477 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 17990219 | 17990219 | PRJEB7614_P_NODE_7475_length_165_cov_3.735294_g7408_i0 | PRJEB7614 | 7475 | 165 | 3.735294 | 6.1632351 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 219 | 1.29e-52 | NTclustered | gi|296933105|gb|HM014322.1| | 11676 | g7408 | i0 | 90.533 | 102.078787878788 | 169 | 11 | 100 | 4 | 1 | 165 | 1379 | 1212 | HIV-1 isolate NA20_LN8 from United Kingdom envelope glycoprotein (env) gene, partial cds | blastn | 16843 | 219 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 24364515 | 24364515 | PRJEB7614_P_NODE_2540_length_242_cov_2.164319_g2473_i0 | PRJEB7614 | 2540 | 242 | 2.164319 | 5.23765198 | Lentivirus humimdef1 | 3418650 | Viruses | Viruses | 255 | 1.55e-63 | NTclustered | gi|2274428698|gb|ON891032.1| | 11676 | g2473 | i0 | 85.83 | 101.388429752066 | 247 | 28 | 100 | 6 | 1 | 242 | 1621 | 1377 | HIV-1 isolate V703_1407_090_RE_pblib003_s from South Africa nonfunctional rev protein (rev) gene, partial sequence; tat protein (tat) gene, partial cds; and vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds | blastn | 24536 | 255 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25525694 | 25525694 | PRJEB7614e_S_NODE_22193_length_164_cov_1.023256_g22185_i0 | PRJEB7614 | 22193 | 164 | 1.023256 | 1.67813984 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 235 | 1.27e-57 | NTclustered | gi|472270709|gb|KC690689.1| | 11676 | g22185 | i0 | 93.125 | 97.2743902439024 | 160 | 11 | 98 | 0 | 1 | 160 | 523 | 682 | HIV-1 isolate KRC306703 from South Korea envelope glycoprotein (env) gene, partial cds | blastn | 15953 | 235 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25661670 | 25661670 | PRJEB7614e_S_NODE_1250_length_224_cov_5.693122_g1242_i0 | PRJEB7614 | 1250 | 224 | 5.693122 | 12.75259328 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 318 | 1.78e-82 | NTclustered | gi|914330336|gb|KT276259.1| | 11676 | g1242 | i0 | 92.377 | 100.678571428571 | 223 | 17 | 99 | 0 | 1 | 223 | 7089 | 6867 | HIV-1 isolate ARP1199 from Spain gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds | blastn | 22552 | 318 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25661674 | 25661674 | PRJEB7614e_S_NODE_3002_length_194_cov_1.496855_g2994_i0 | PRJEB7614 | 3002 | 194 | 1.496855 | 2.9038987 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 315 | 1.93e-81 | NTclustered | gi|1799131850|gb|MN871234.1| | 11676 | g2994 | i0 | 95.876 | 100 | 194 | 8 | 100 | 0 | 1 | 194 | 263 | 70 | HIV-1 isolate CON-18-D07-1125-d-1 envelope glycoprotein (env) gene, complete cds | blastn | 19400 | 315 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25752651 | 25752651 | PRJEB7614b_S_NODE_258_length_322_cov_39496.411150_g256_i0 | PRJEB7614 | 258 | 322 | 39496.41115 | 127178.443903 | Viruses | 10239 | Viruses | Viruses | 86.1 | 2.98e-12 | NTclustered | gi|2859928216|gb|PQ511684.1| | 11676 | g256 | i0 | 100 | 15.6739130434783 | 46 | 0 | 14 | 0 | 277 | 322 | 9467 | 9512 | HIV-1 isolate GB1LV100191 from USA, complete genome | blastn | 5047 | 86.1 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25752662 | 25752662 | PRJEB7614c_S_NODE_106_length_362_cov_2110.149847_g105_i0 | PRJEB7614 | 106 | 362 | 2110.149847 | 7638.74244614 | Viruses | 10239 | Viruses | Viruses | 119 | 3.3400000000000003e-22 | NTclustered | gi|2859928216|gb|PQ511684.1| | 11676 | g105 | i0 | 98.507 | 19.0055248618785 | 67 | 1 | 19 | 0 | 1 | 67 | 9533 | 9467 | HIV-1 isolate GB1LV100191 from USA, complete genome | blastn | 6880 | 119 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25797748 | 25797748 | PRJEB7614e_S_NODE_1011_length_239_cov_5.843137_g1003_i0 | PRJEB7614 | 1011 | 239 | 5.843137 | 13.96509743 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 348 | 2.4500000000000002e-91 | NTclustered | gi|18075849|emb|AJ418513.1| | 11676 | g1003 | i0 | 92.975 | 100.581589958159 | 242 | 11 | 100 | 4 | 1 | 239 | 1543 | 1305 | Human immunodeficiency virus type 1 env gene for gp160 protein, genomic RNA, clone B-002 | blastn | 24039 | 348 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25797756 | 25797756 | PRJEB7614e_S_NODE_2451_length_199_cov_1.365854_g2443_i0 | PRJEB7614 | 2451 | 199 | 1.365854 | 2.71804946 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 274 | 3.3899999999999997e-69 | NTclustered | gi|1041501072|gb|KX129460.1| | 11676 | g2443 | i0 | 93.478 | 88.070351758794 | 184 | 12 | 92 | 0 | 16 | 199 | 1249 | 1066 | HIV-1 isolate IC.689.0.G10 from USA envelope glycoprotein (env) gene, partial cds | blastn | 17526 | 274 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25797763 | 25797763 | PRJEB7614e_S_NODE_5131_length_184_cov_0.865772_g5123_i0 | PRJEB7614 | 5131 | 184 | 0.865772 | 1.59302048 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 296 | 6.57e-76 | NTclustered | gi|55735975|gb|AY771591.1| | 11676 | g5123 | i0 | 95.652 | 99.9619565217391 | 184 | 8 | 100 | 0 | 1 | 184 | 5686 | 5503 | HIV-1 isolate BREPM269 from Brazil, complete genome | blastn | 18393 | 296 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 25933969 | 25933969 | PRJEB7614e_S_NODE_15732_length_168_cov_1.037594_g15724_i0 | PRJEB7614 | 15732 | 168 | 1.037594 | 1.74315792 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 272 | 9.95e-69 | NTclustered | gi|140089978|gb|EF179967.1| | 11676 | g15724 | i0 | 95.833 | 99.3869047619048 | 168 | 7 | 100 | 0 | 1 | 168 | 814 | 647 | HIV-1 isolate LTNP 11005 clone CL4 from France envelope glylcoprotein (env) gene, partial cds | blastn | 16697 | 272 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26069958 | 26069958 | PRJEB7614e_S_NODE_1085_length_233_cov_5.535354_g1077_i0 | PRJEB7614 | 1085 | 233 | 5.535354 | 12.89737482 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 350 | 6.6e-92 | NTclustered | gi|2575864304|gb|OR327234.1| | 11676 | g1077 | i0 | 95.045 | 98.412017167382 | 222 | 11 | 95 | 0 | 1 | 222 | 1455 | 1234 | HIV-1 isolate 93CBG4-18909/14724 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds | blastn | 22930 | 350 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26069967 | 26069967 | PRJEB7614e_S_NODE_2445_length_199_cov_4.658537_g2437_i0 | PRJEB7614 | 2445 | 199 | 4.658537 | 9.27048863 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 300 | 5.5900000000000004e-77 | NTclustered | gi|45738219|gb|AY563170.1| | 11676 | g2437 | i0 | 93.596 | 100.633165829146 | 203 | 8 | 100 | 3 | 1 | 199 | 6879 | 6678 | HIV-1 isolate ARG4006 from Argentina gag protein (gag) and pol polyprotein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), env protein (env), and nef protein (nef) genes, complete cds | blastn | 20026 | 300 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26069971 | 26069971 | PRJEB7614e_S_NODE_43677_length_152_cov_1.205128_g43669_i0 | PRJEB7614 | 43677 | 152 | 1.205128 | 1.83179456 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 259 | 6.82e-65 | NTclustered | gi|459615|emb|Z30689.1| | 11676 | g43669 | i0 | 97.368 | 99.9934210526316 | 152 | 4 | 100 | 0 | 1 | 152 | 340 | 189 | HIV-1 proviral vif gene DNA | blastn | 15199 | 259 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26206246 | 26206246 | PRJEB7614e_S_NODE_3278_length_192_cov_1.426752_g3270_i0 | PRJEB7614 | 3278 | 192 | 1.426752 | 2.73936384 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 342 | 8.759999999999999e-90 | NTclustered | gi|672891704|gb|KF701940.1| | 11676 | g3270 | i0 | 98.953 | 99.4375 | 191 | 2 | 99 | 0 | 2 | 192 | 1139 | 949 | HIV-1 isolate gag357 from Canada gag protein gene, partial cds | blastn | 19092 | 342 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26206255 | 26206255 | PRJEB7614e_S_NODE_5126_length_184_cov_2.241611_g5118_i0 | PRJEB7614 | 5126 | 184 | 2.241611 | 4.12456424 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 307 | 3.0300000000000004e-79 | NTclustered | gi|303291584|gb|GQ412378.1| | 11676 | g5118 | i0 | 96.739 | 100.005434782609 | 184 | 6 | 100 | 0 | 1 | 184 | 224 | 407 | HIV-1 isolate 5_PB_40wpi_5 envelope glycoprotein (env) gene, partial cds | blastn | 18401 | 307 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26296602 | 26296602 | PRJEB7614b_S_NODE_598_length_252_cov_52965.101382_g596_i0 | PRJEB7614 | 598 | 252 | 52965.101382 | 133472.05548264 | Viruses | 10239 | Viruses | Viruses | 104 | 6.22e-18 | NTclustered | gi|2859928216|gb|PQ511684.1| | 11676 | g596 | i0 | 100 | 23.1865079365079 | 56 | 0 | 22 | 0 | 1 | 56 | 9522 | 9467 | HIV-1 isolate GB1LV100191 from USA, complete genome | blastn | 5843 | 104 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26342078 | 26342078 | PRJEB7614e_S_NODE_18615_length_166_cov_2.992366_g18607_i0 | PRJEB7614 | 18615 | 166 | 2.992366 | 4.96732756 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 237 | 3.58e-58 | NTclustered | gi|2105864015|gb|MZ347619.1| | 11676 | g18607 | i0 | 92.771 | 87.3795180722892 | 166 | 9 | 100 | 2 | 1 | 166 | 1423 | 1585 | HIV-1 strain AA086d_ENV28_172days from Thailand envelope glycoprotein (env), vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds | blastn | 14505 | 237 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26342079 | 26342079 | PRJEB7614e_S_NODE_22191_length_164_cov_1.387597_g22183_i0 | PRJEB7614 | 22191 | 164 | 1.387597 | 2.27565908 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 287 | 3.45e-73 | NTclustered | gi|16118337|gb|AY037276.1| | 11676 | g22183 | i0 | 98.171 | 99.6463414634146 | 164 | 3 | 100 | 0 | 1 | 164 | 3295 | 3132 | HIV-1 isolate ARMA070 from Argentina nonfunctional gag protein and nonfunctional pol protein genes, partial sequence; vif protein (vif) gene, complete cds; and nonfunctional vpr protein, nonfunctional tat protein, nonfunctional rev protein, nonfunctional vpu protein, nonfunctional envelope glycoprotein, and nonfunctional nef protein genes, complete sequence | blastn | 16342 | 287 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26342080 | 26342080 | PRJEB7614e_S_NODE_2527_length_198_cov_1.398773_g2519_i0 | PRJEB7614 | 2527 | 198 | 1.398773 | 2.76957054 | Human immunodeficiency virus 1 | 11676 | Viruses | Viruses | 339 | 1.18e-88 | NTclustered | gi|662376321|gb|KF729811.1| | 11676 | g2519 | i0 | 97.475 | 99.959595959596 | 198 | 5 | 100 | 0 | 1 | 198 | 1028 | 1225 | HIV-1 isolate 010-00134-8_22OCT96 from USA pol protein (pol) gene, partial cds | blastn | 19792 | 339 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26432614 | 26432614 | PRJEB7614a_S_NODE_73695_length_222_cov_59.566845_g72491_i0 | PRJEB7614 | 73695 | 222 | 59.566845 | 132.2383959 | root | 1 | Root_unresolved | Root_unresolved | 99 | 2.49e-16 | NTclustered | gi|2859928216|gb|PQ511684.1| | 11676 | g72491 | i0 | 98.214 | 26.8243243243243 | 56 | 1 | 25 | 0 | 1 | 56 | 9524 | 9469 | HIV-1 isolate GB1LV100191 from USA, complete genome | blastn | 5955 | 100 | 0.99 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 | ||
| 26432641 | 26432641 | PRJEB7614e_S_NODE_1663_length_211_cov_2882.176136_g1655_i0 | PRJEB7614 | 1663 | 211 | 2882.176136 | 6081.39164696 | Viruses | 10239 | Viruses | Viruses | 71.3 | 5.12e-8 | NTclustered | gi|2859928216|gb|PQ511684.1| | 11676 | g1655 | i0 | 100 | 19.7251184834123 | 38 | 0 | 18 | 0 | 174 | 211 | 9466 | 9503 | HIV-1 isolate GB1LV100191 from USA, complete genome | blastn | 4162 | 71.3 | 1 | Viruses | Pararnavirae | Artverviricota | Revtraviricetes | Ortervirales | Retroviridae | Lentivirus | Lentivirus humimdef1 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;