RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB7614" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB7614 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25525662 25525662 PRJEB7614a_S_NODE_44553_length_285_cov_8.644000_g43349_i0 PRJEB7614 44553 285 8.644 24.6354 Phycisphaerales bacterium 2052180 Bacteria Bacteria 335 2.329999999999999e-87   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g43349 i0 89.85 41.080701754386 266 20 93 6 1 264 2190131 2190391 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 11708 335 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
25525705 25525705 PRJEB7614e_S_NODE_8665_length_176_cov_3.078014_g8657_i0 PRJEB7614 8665 176 3.078014 5.41730464 Fuerstiella marisgermanici 1891926 Bacteria Bacteria 115 1.87e-21   NTclustered gi|1140105870|gb|CP017641.1| 1891926 g8657 i0 86.538 0.590909090909091 104 14 59 0 31 134 5362467 5362364 Fuerstiella marisgermanici strain NH11 chromosome, complete genome blastn 104 115 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Fuerstiella Fuerstiella marisgermanici
26206260 26206260 PRJEB7614e_S_NODE_990_length_240_cov_65.970732_g982_i0 PRJEB7614 990 240 65.970732 158.3297568 Thalassoglobus polymorphus 2527994 Bacteria Bacteria 276 1.1799999999999998e-69   NTclustered gi|1712486265|gb|CP036267.1| 2527994 g982 i0 88.546 90.0583333333333 227 26 95 0 8 234 5085499 5085725 Thalassoglobus polymorphus strain Mal48 chromosome blastn 21614 276 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Thalassoglobus Thalassoglobus polymorphus
26342072 26342072 PRJEB7614e_S_NODE_1279_length_223_cov_6.005319_g1271_i0 PRJEB7614 1279 223 6.005319 13.39186137 Roseimaritima ulvae 980254 Bacteria Bacteria 202 1.86e-47   NTclustered gi|1727550343|gb|CP042914.1| 980254 g1271 i0 84.729 91.4484304932735 203 29 90 2 10 210 6157637 6157435 Roseimaritima ulvae strain UC8 chromosome, complete genome blastn 20393 202 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Roseimaritima Roseimaritima ulvae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;