RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB7614" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJEB7614 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25525683 25525683 PRJEB7614b_S_NODE_497_length_267_cov_6.814655_g495_i0 PRJEB7614 497 267 6.814655 18.19512885 Vannella septentrionalis 197531 Discosea other_Eukaryota 359 1.29e-94   NTclustered gi|300078499|gb|GU001161.1| 197531 g495 i0 91.011 56.3183520599251 267 22 100 2 1 267 1178 914 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15037 359 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
25616389 25616389 PRJEB7614e_S_NODE_625_length_276_cov_26.867220_g617_i0 PRJEB7614 625 276 26.86722 74.1535272 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 488 1.6299999999999995e-133   NTclustered gi|300078496|gb|GU001158.1| 5778 g617 i0 98.551 37.8913043478261 276 4 100 0 1 276 950 1225 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10458 488 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26069944 26069944 PRJEB7614b_S_NODE_261_length_322_cov_3.202091_g259_i0 PRJEB7614 261 322 3.202091 10.31073302 Amoebozoa sp. Pa2 1892891 Root_unresolved Root_unresolved 113 1.37e-20   NTclustered gi|407369297|emb|FN562420.1| 688084 g259 i0 73.86 41.8074534161491 329 66 100 18 1 322 1100 785 Amoebozoa sp. Pa20 partial 18S rRNA gene, isolate Pa20 blastn 13462 113 1 Eukaryota Amoebozoa             Amoebozoa sp. Pa20
26069968 26069968 PRJEB7614e_S_NODE_253_length_359_cov_7.466049_g245_i0 PRJEB7614 253 359 7.466049 26.80311591 Copromyxa sp. PKD 2 3118317 Tubulinea other_Eukaryota 560 4.57e-155   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g245 i0 96.726 68.91643454039 336 11 94 0 24 359 76 411 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 24741 560 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;