RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB75230" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75230 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11615192 11615192 PRJEB75230_P_NODE_172130_length_242_cov_1.633136_g171948_i0 PRJEB75230 172130 242 1.633136 3.95218912 Akkermansia sp. N21116 3040764 Bacteria Bacteria 52.8 0.022   NTclustered gi|2634178342|gb|CP139035.1| 3040764 g171948 i0 100 0.115702479338843 28 0 12 0 213 240 3145593 3145566 Akkermansia sp. N21116 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp. N21116
16712444 16712444 PRJEB75230_P_NODE_104194_length_260_cov_1.641711_g104012_i0 PRJEB75230 104194 260 1.641711 4.2684486 Verrucomicrobium sp. GAS474 1882831 Bacteria Bacteria 198 2.88e-46   NTclustered gi|1085974270|emb|LT629781.1| 1882831 g104012 i0 81.405 72.9 242 45 93 0 19 260 2077281 2077040 Verrucomicrobiaceae bacterium GAS474 genome assembly, chromosome: I blastn 18954 198 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. GAS474
23088234 23088234 PRJEB75230_P_NODE_150699_length_246_cov_0.890173_g150517_i0 PRJEB75230 150699 246 0.890173 2.18982558 Opitutales bacterium 2026772 Bacteria Bacteria 67.6 7.94e-7   NTclustered gi|2891482121|emb|OZ219855.1| 2026772 g150517 i0 97.5 46.239837398374 40 0 16 1 11 49 71822 71861 MAG: Opitutales bacterium isolate e4292735-b3b5-42df-bce3-ad3ef7a88f44 genome assembly, chromosome: 14 blastn 11375 67.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;