RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB75230" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB75230 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7788298 7788298 PRJEB75230_P_NODE_115567_length_252_cov_1.290503_g115385_i0 PRJEB75230 115567 252 1.290503 3.25206756 Geobacter sp. DSM 9736 1277350 Bacteria Bacteria 52.8 0.023   NTclustered gi|1210070030|emb|LT896716.1| 1277350 g115385 i0 100 0.111111111111111 28 0 11 0 183 210 3582581 3582554 Geobacter sp. DSM 9736 genome assembly, chromosome: I blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. DSM 9736
23088120 23088120 PRJEB75230_P_NODE_142099_length_247_cov_0.885057_g141917_i0 PRJEB75230 142099 247 0.885057 2.18609079 Candidatus Electronema halotolerans 3036122 Bacteria Bacteria 56.5 0.002   NTclustered gi|2322424479|emb|OW818675.1| 3036122 g141917 i0 96.97 0.133603238866397 33 1 13 0 111 143 1790704 1790736 Candidatus Electronema halotolerans isolate LOGT-cMAG genome assembly, chromosome: 1 blastn 33 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Candidatus Electronema Candidatus Electronema halotolerans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;