RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB75230" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB75230 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7373234 7373234 PRJEB75230_P_NODE_104186_length_260_cov_1.647059_g104004_i0 PRJEB75230 104186 260 1.647059 4.2823534 Borrelia 138 Bacteria Bacteria 52.8 0.024   NTclustered gi|2225474869|gb|CP073159.1| 141 g104004 i0 100 0.323076923076923 28 0 11 0 178 205 521860 521833 Borrelia parkeri strain SLO chromosome, complete genome blastn 84 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia parkeri
14164541 14164541 PRJEB75230_P_NODE_133412_length_249_cov_0.875000_g133230_i0 PRJEB75230 133412 249 0.875 2.17875 Borreliella valaisiana 62088 Bacteria Bacteria 54.7 0.006   NTclustered gi|224497476|gb|CP001442.1| 445987 g133230 i0 96.875 0.1285140562249 32 1 13 0 107 138 261 230 Borreliella valaisiana VS116 plasmid VS116_lp28-8, complete sequence blastn 32 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella valaisiana
18847506 18847506 PRJEB75230_P_NODE_129375_length_249_cov_1.312500_g129193_i0 PRJEB75230 129375 249 1.3125 3.268125 Leptospira 171 Bacteria Bacteria 54.7 0.006   NTclustered gi|2612877174|gb|CP136243.1| 173 g129193 i0 94.444 10.0401606425703 36 0 14 1 103 138 3928431 3928464 Leptospira interrogans strain CUDO5 chromosome I, complete sequence blastn 2500 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira interrogans
23088395 23088395 PRJEB75230_P_NODE_161619_length_244_cov_0.900585_g161437_i0 PRJEB75230 161619 244 0.900585 2.1974274 Treponema sp. OMZ 305 1659192 Bacteria Bacteria 239 1.57e-58   NTclustered gi|2265133351|gb|CP051300.1| 1659192 g161437 i0 85.043 5.75409836065574 234 35 96 0 2 235 241366 241133 Treponema sp. OMZ 305 chromosome, complete genome blastn 1404 239 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 305

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;