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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB75230" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75230 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1410565 1410565 PRJEB75230_P_NODE_119222_length_251_cov_0.865169_g119040_i0 PRJEB75230 119222 251 0.865169 2.17157419 Strongyloides papillosus 174720 Nematoda Nematoda 62.1 3.78e-5   NTclustered gi|687022689|emb|LM525603.1| 174720 g119040 i0 97.222 0.143426294820717 36 1 14 0 206 241 115401 115436 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000015 blastn 36 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
1411435 1411435 PRJEB75230_P_NODE_18682_length_391_cov_1.327044_g18500_i0 PRJEB75230 18682 391 1.327044 5.18874204 Caenorhabditis briggsae 6238 Nematoda Nematoda 54.7 0.01   NTclustered gi|268576584|ref|XM_002643226.1| 6238 g18500 i0 100 0.0741687979539642 29 0 7 0 159 187 128 100 Caenorhabditis briggsae Protein CBG08144 (CBG08144), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
3963717 3963717 PRJEB75230_P_NODE_63824_length_295_cov_1.387387_g63642_i0 PRJEB75230 63824 295 1.387387 4.09279165 Loa loa 7209 Nematoda Nematoda 54.7 0.008   NTclustered gi|312092089|ref|XM_003147166.1| 7209 g63642 i0 100 0.0983050847457627 29 0 10 0 264 292 147 175 Loa loa hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
5240677 5240677 PRJEB75230_P_NODE_9845_length_473_cov_18.597500_g9663_i0 PRJEB75230 9845 473 18.5975 87.966175 Pristionchus pauli 376545 Nematoda Nematoda 281 5.39e-71   NTclustered gi|150982019|gb|EF634598.1| 376545 g9663 i0 80.939 4.2938689217759 362 63 76 6 67 425 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2031 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
6514975 6514975 PRJEB75230_P_NODE_186066_length_226_cov_2.411765_g185884_i0 PRJEB75230 186066 226 2.411765 5.4505889 Strongyloides papillosus 174720 Nematoda Nematoda 204 5.25e-48   NTclustered gi|687022656|emb|LM525570.1| 174720 g185884 i0 86.486 78.2433628318584 185 25 82 0 42 226 200443 200627 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000005 blastn 17683 204 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
12890493 12890493 PRJEB75230_P_NODE_23751_length_369_cov_1.250000_g23569_i0 PRJEB75230 23751 369 1.25 4.6125 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.035   NTclustered gi|687865584|emb|LK927629.1| 6239 g23569 i0 96.774 0.168021680216802 31 1 8 0 292 322 161885 161855 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000011 blastn 62 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15438337 15438337 PRJEB75230_P_NODE_114573_length_253_cov_1.283333_g114391_i0 PRJEB75230 114573 253 1.283333 3.24683249 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.023   NTclustered gi|351060467|emb|FO080963.1| 6239 g114391 i0 94.286 0.276679841897233 35 1 14 1 129 163 60372 60339 Caenorhabditis elegans YAC Y23H5B, complete sequence blastn 70 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16713843 16713843 PRJEB75230_P_NODE_40534_length_327_cov_1.204724_g40352_i0 PRJEB75230 40534 327 1.204724 3.93944748 Caenorhabditis remanei 31234 Nematoda Nematoda 211 4.79e-50   NTclustered gi|2445372511|ref|XM_053729906.1| 31234 g40352 i0 82.377 17.045871559633 244 41 74 2 1 243 631 873 Caenorhabditis remanei uncharacterized protein (GCK72_013604), partial mRNA blastn 5574 211 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
17987455 17987455 PRJEB75230_P_NODE_114595_length_253_cov_1.283333_g114413_i0 PRJEB75230 114595 253 1.283333 3.24683249 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.023   NTclustered gi|690019424|emb|LM526939.1| 174720 g114413 i0 100 0.221343873517787 28 0 11 0 142 169 4653 4680 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0001279 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
23948714 23948714 PRJEB75230_P_NODE_7579_length_520_cov_9.955257_g7397_i0 PRJEB75230 7579 520 9.955257 51.7673364 Pristionchus 54125 Nematoda Nematoda 154 1.36e-32   NTclustered gi|524845312|gb|KC819366.1| 1355913 g7397 i0 80.18 22.3673076923077 222 30 41 11 68 282 49 263 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 11631 154 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;