RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB75230" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJEB75230 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2687531 2687531 PRJEB75230_P_NODE_563_length_1545_cov_3.976902_g492_i0 PRJEB75230 563 1545 3.976902 61.4431359 Squamamoeba japonica 1167875 Evosea other_Eukaryota 303 3.97e-77   NTclustered gi|381423465|gb|JN638030.1| 1167875 g492 i0 86.429 16.4543689320388 280 34 22 4 494 771 1461 1184 Squamamoeba japonica strain CCAP 1593/1 clone 2218 18S ribosomal RNA gene, partial sequence blastn 25422 303 1 Eukaryota Amoebozoa   Evosea       Squamamoeba Squamamoeba japonica
7789225 7789225 PRJEB75230_P_NODE_23427_length_370_cov_1.555556_g23245_i0 PRJEB75230 23427 370 1.555556 5.7555572 Cavenderia fasciculata 261658 Evosea other_Eukaryota 60.2 2.1e-4   NTclustered gi|470250729|ref|XM_004358405.1| 261658 g23245 i0 94.872 0.105405405405405 39 1 11 1 3 41 504 467 Cavenderia fasciculata uncharacterized protein (DFA_00473), partial mRNA blastn 39 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
7789541 7789541 PRJEB75230_P_NODE_4227_length_665_cov_2.530405_g4051_i0 PRJEB75230 4227 665 2.530405 16.82719325 Rostrostelium ellipticum 361140 Evosea other_Eukaryota 385 5.75e-102   NTclustered gi|117413669|emb|AM168485.1| 361140 g4051 i0 82.035 82.4917293233083 462 74 69 8 1 456 586 128 Rostrostelium ellipticum partial tuba gene for alpha-tubulin, exon 1, isolate AE2 blastn 54857 385 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Rostrostelium Rostrostelium ellipticum
10341036 10341036 PRJEB75230_P_NODE_92649_length_269_cov_1.566327_g92467_i0 PRJEB75230 92649 269 1.566327 4.21341963 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 182 3.01e-41   NTclustered gi|704367441|gb|KP057244.1| 108607 g92467 i0 80.672 32.3977695167286 238 42 88 4 6 241 474 239 Mastigamoeba balamuthi serine hydroxymethyltransferase mRNA, complete cds blastn 8715 182 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
17988516 17988516 PRJEB75230_P_NODE_2775_length_808_cov_2.727891_g2618_i0 PRJEB75230 2775 808 2.727891 22.041359280000002 Dictyostelium purpureum 5786 Evosea other_Eukaryota 544 1.1e-149   NTclustered gi|330792727|ref|XM_003284391.1| 5786 g2618 i0 79.349 78.8180693069307 799 146 98 17 6 794 847 58 Dictyostelium purpureum elongation factor 1 alpha (DICPUDRAFT_52946), mRNA blastn 63685 544 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
17989330 17989330 PRJEB75230_P_NODE_78775_length_281_cov_1.096154_g78593_i0 PRJEB75230 78775 281 1.096154 3.08019274 Entamoeba dispar 46681 Evosea other_Eukaryota 63.9 1.2e-5   NTclustered gi|167385781|ref|XM_001733331.1| 370354 g78593 i0 100 0.120996441281139 34 0 12 0 165 198 2307 2340 Entamoeba dispar SAW760 ataxia telangiectasia mutated, putative (EDI_100660), partial mRNA blastn 34 63.9 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
20538091 20538091 PRJEB75230_P_NODE_38037_length_332_cov_0.891892_g37855_i0 PRJEB75230 38037 332 0.891892 2.96108144 Dictyostelium discoideum 44689 Evosea other_Eukaryota 235 2.8899999999999996e-57   NTclustered gi|66805998|ref|XM_631629.1| 352472 g37855 i0 79.758 7.12650602409639 331 61 99 5 5 332 1405 1732 Dictyostelium discoideum AX4 elongation factor 2 (efbA) mRNA, complete cds blastn 2366 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20538624 20538624 PRJEB75230_P_NODE_7337_length_527_cov_1.017621_g7155_i0 PRJEB75230 7337 527 1.017621 5.36286267 Cavenderia fasciculata 261658 Evosea other_Eukaryota 56.5 0.004   NTclustered gi|470264556|ref|XM_004361183.1| 261658 g7155 i0 100 0.0569259962049336 30 0 6 0 128 157 788 759 Cavenderia fasciculata pleckstrin domain-containing protein (gxcBB), partial mRNA blastn 30 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
24362689 24362689 PRJEB75230_P_NODE_2280_length_881_cov_2.478960_g2132_i0 PRJEB75230 2280 881 2.47896 21.8396376 Filamoeba nolandi 136452 Evosea other_Eukaryota 580 9.169999999999999e-161   NTclustered gi|146448849|gb|EF513192.1| 136452 g2132 i0 78.644 63.6867196367764 885 181 100 8 1 881 475 1355 Filamoeba nolandi elongation factor 1A (EF1A) gene, partial cds blastn 56108 580 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba nolandi
24363454 24363454 PRJEB75230_P_NODE_69160_length_289_cov_2.458333_g68978_i0 PRJEB75230 69160 289 2.458333 7.10458237 Dictyostelium purpureum 5786 Evosea other_Eukaryota 52.8 0.027   NTclustered gi|330840734|ref|XM_003292318.1| 5786 g68978 i0 100 0.193771626297578 28 0 10 0 136 163 1270 1243 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_99321), mRNA blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;