RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB75230" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB75230 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2686063 2686063 PRJEB75230_P_NODE_121283_length_251_cov_0.865169_g121101_i0 PRJEB75230 121283 251 0.865169 2.17157419 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 237 5.85e-58   NTclustered gi|2874253885|emb|OY970060.1| 171953 g121101 i0 83.858 2 254 35 100 4 1 251 4723639 4723889 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 502 237 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6514500 6514500 PRJEB75230_P_NODE_149946_length_246_cov_0.890173_g149764_i0 PRJEB75230 149946 246 0.890173 2.18982558 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 226 1.2399999999999997e-54   NTclustered gi|2874254027|emb|OY970352.1| 171953 g149764 i0 83.75 0.975609756097561 240 37 97 2 1 239 4638252 4638490 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 240 226 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
9065142 9065142 PRJEB75230_P_NODE_85248_length_275_cov_1.524752_g85066_i0 PRJEB75230 85248 275 1.524752 4.193068 Candidatus Solibacter usitatus 332163 Bacteria Bacteria 446 9.92e-121   NTclustered gi|470468228|ref|NR_076103.1| 332163 g85066 i0 95.699 79.1272727272727 279 8 100 2 1 275 1258 1536 Candidatus Solibacter usitatus strain Ellin6076 23S ribosomal RNA gene, complete sequence blastn 21760 446 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus
23088598 23088598 PRJEB75230_P_NODE_177299_length_242_cov_0.911243_g177117_i0 PRJEB75230 177299 242 0.911243 2.20520806 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 414 2.41e-111   NTclustered gi|2874253678|emb|OY969112.1| 171953 g177117 i0 97.521 9.45867768595041 242 6 100 0 1 242 5814662 5814903 MAG: uncultured Acidobacteriota bacterium isolate MFD04212.bin.1.16 genome assembly, chromosome: 1 blastn 2289 414 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;