contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJEB75230" and tax_kingdom = "Fusobacteriati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3962198 | 3962198 | PRJEB75230_P_NODE_126504_length_250_cov_0.870056_g126322_i0 | PRJEB75230 | 126504 | 250 | 0.870056 | 2.17514 | Fusobacterium ulcerans | 861 | Bacteria | Bacteria | 52.8 | 0.023 | NTclustered | gi|1370545701|gb|CP028105.1| | 861 | g126322 | i0 | 100 | 0.224 | 28 | 0 | 11 | 0 | 79 | 106 | 2943830 | 2943803 | Fusobacterium ulcerans strain ATCC 49185 chromosome, complete genome | blastn | 56 | 52.8 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium ulcerans | ||
| 9063496 | 9063496 | PRJEB75230_P_NODE_138908_length_248_cov_0.880000_g138726_i0 | PRJEB75230 | 138908 | 248 | 0.88 | 2.1824 | Sneathia sanguinegens | 40543 | Bacteria | Bacteria | 453 | 5.2600000000000005e-123 | NTclustered | gi|2769805188|gb|CP160095.1| | 40543 | g138726 | i0 | 99.597 | 446.866935483871 | 248 | 1 | 100 | 0 | 1 | 248 | 72423 | 72670 | Sneathia sanguinegens strain CCUG 41628T chromosome, complete genome | blastn | 110823 | 453 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Sneathia | Sneathia sanguinegens | ||
| 11199407 | 11199407 | PRJEB75230_P_NODE_5669_length_584_cov_2.021526_g5488_i0 | PRJEB75230 | 5669 | 584 | 2.021526 | 11.80571184 | Fusobacterium | 848 | Bacteria | Bacteria | 1062 | 0 | NTclustered | gi|2705020071|gb|CP084132.1| | 851 | g5488 | i0 | 99.486 | 481.244863013699 | 584 | 3 | 100 | 0 | 1 | 584 | 106310 | 106893 | Fusobacterium nucleatum strain KCOM3713 chromosome, complete genome | blastn | 281047 | 1062 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 12474981 | 12474981 | PRJEB75230_P_NODE_28790_length_352_cov_2.007168_g28608_i0 | PRJEB75230 | 28790 | 352 | 2.007168 | 7.06523136 | Fusobacterium | 848 | Bacteria | Bacteria | 651 | 0 | NTclustered | gi|1721134154|emb|LR698955.1| | 851 | g28608 | i0 | 100 | 490.164772727273 | 352 | 0 | 100 | 0 | 1 | 352 | 84652 | 84301 | Fusobacterium nucleatum isolate MGYG-HGUT-01347 genome assembly, chromosome: 1 | blastn | 172538 | 651 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 18847510 | 18847510 | PRJEB75230_P_NODE_129875_length_249_cov_1.102273_g129693_i0 | PRJEB75230 | 129875 | 249 | 1.102273 | 2.74465977 | root | 1 | Root_unresolved | Root_unresolved | 52.8 | 0.023 | NTclustered | gi|2704944210|gb|CP077182.1| | 851 | g129693 | i0 | 100 | 0.78714859437751 | 28 | 0 | 11 | 0 | 141 | 168 | 720536 | 720509 | Fusobacterium nucleatum strain SB032 chromosome, complete genome | blastn | 196 | 52.8 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 19262252 | 19262252 | PRJEB75230_P_NODE_176196_length_242_cov_0.911243_g176014_i0 | PRJEB75230 | 176196 | 242 | 0.911243 | 2.20520806 | Fusobacterium pseudoperiodonticum | 2663009 | Bacteria | Bacteria | 442 | 1.1099999999999995e-119 | NTclustered | gi|1276712381|gb|CP024701.1| | 2663009 | g176014 | i0 | 99.587 | 99.7148760330578 | 242 | 1 | 100 | 0 | 1 | 242 | 1632865 | 1632624 | Fusobacterium pseudoperiodonticum strain KCOM 1277 chromosome, complete genome | blastn | 24131 | 442 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium pseudoperiodonticum | ||
| 20122774 | 20122774 | PRJEB75230_P_NODE_81156_length_279_cov_1.121359_g80974_i0 | PRJEB75230 | 81156 | 279 | 1.121359 | 3.12859161 | Fusobacterium | 848 | Bacteria | Bacteria | 54.7 | 0.007 | NTclustered | gi|958162200|gb|CP013331.1| | 1307442 | g80974 | i0 | 100 | 0.824372759856631 | 29 | 0 | 10 | 0 | 187 | 215 | 1801890 | 1801918 | Fusobacterium hwasookii ChDC F174, complete genome | blastn | 230 | 54.7 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium hwasookii | ||
| 20538789 | 20538789 | PRJEB75230_P_NODE_84177_length_276_cov_1.418719_g83995_i0 | PRJEB75230 | 84177 | 276 | 1.418719 | 3.91566444 | Leptotrichia hongkongensis | 554406 | Bacteria | Bacteria | 510 | 3.48e-140 | NTclustered | gi|1708587163|dbj|AP019846.1| | 554406 | g83995 | i0 | 100 | 384.039855072464 | 276 | 0 | 100 | 0 | 1 | 276 | 70587 | 70862 | Leptotrichia hongkongensis JMUB5056 DNA, complete genome | blastn | 105995 | 510 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia hongkongensis | ||
| 25221921 | 25221921 | PRJEB75230_P_NODE_123000_length_250_cov_1.395480_g122818_i0 | PRJEB75230 | 123000 | 250 | 1.39548 | 3.4887 | Leptotrichia | 32067 | Bacteria | Bacteria | 435 | 1.92e-117 | NTclustered | gi|1708575239|dbj|AP019834.1| | 157687 | g122818 | i0 | 98.008 | 485.52 | 251 | 3 | 100 | 2 | 1 | 250 | 1694903 | 1695152 | Leptotrichia wadei JMUB3933 DNA, complete genome | blastn | 121380 | 435 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia wadei |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;