RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJEB75227" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75227 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6513759 6513759 PRJEB75227_P_NODE_4506_length_335_cov_0.893130_g4335_i0 PRJEB75227 4506 335 0.89313 2.9919855 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 Bacteria Bacteria 446 1.24e-120   NTclustered gi|939198278|gb|CP012665.1| 1704307 g4335 i0 91.212 114.388059701493 330 26 98 3 8 335 15771 15443 Candidatus Xiphinematobacter sp. Idaho Grape, complete genome blastn 38320 446 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria     Candidatus Xiphinematobacter Candidatus Xiphinematobacter sp. Idaho Grape

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;