RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB75227" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB75227 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16712302 16712302 PRJEB75227_P_NODE_10794_length_245_cov_0.906977_g10623_i0 PRJEB75227 10794 245 0.906977 2.22209365 Candidatus Nitrospira inopinata 1715989 Bacteria Bacteria 442 1.1199999999999994e-119   NTclustered gi|952974062|emb|LN885086.1| 1715989 g10623 i0 99.184 4.63673469387755 245 2 100 0 1 245 735116 735360 Nitrospira sp. ENR4 genome assembly NiCh1, chromosome : 1 blastn 1136 442 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira inopinata
16712315 16712315 PRJEB75227_P_NODE_11794_length_242_cov_0.923077_g11623_i0 PRJEB75227 11794 242 0.923077 2.23384634 Nitrospira sp. 70125 Bacteria Bacteria 296 9.12e-76   NTclustered gi|2194436381|gb|CP092080.1| 70125 g11623 i0 88.797 1.98760330578512 241 27 99 0 1 241 2285586 2285346 MAG: Nitrospira sp. isolate UBC1 chromosome blastn 481 296 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;