RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB75227" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75227 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10338654 10338654 PRJEB75227_P_NODE_10069_length_247_cov_0.896552_g9898_i0 PRJEB75227 10069 247 0.896552 2.21448344 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.022   NTclustered gi|2912981848|dbj|AP039587.1| 145626 g9898 i0 96.774 0.125506072874494 31 1 13 0 182 212 52161435 52161405 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 6, sequence blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11614136 11614136 PRJEB75227_P_NODE_3430_length_391_cov_0.981132_g3259_i0 PRJEB75227 3430 391 0.981132 3.83622612 Lottia gigantea 225164 Mollusca Mollusca 294 5.63e-75   NTclustered gi|676430959|ref|XM_009047849.1| 225164 g3259 i0 81.564 2.54987212276215 358 65 92 1 34 391 3513 3157 Lottia gigantea hypothetical protein mRNA blastn 997 294 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lottiidae Lottia Lottia gigantea
15438092 15438092 PRJEB75227_P_NODE_1653_length_611_cov_1.301115_g1482_i0 PRJEB75227 1653 611 1.301115 7.94981265 Mytilus edulis 6550 Mollusca Mollusca 313 2.52e-80   NTclustered gi|2912324166|ref|XM_071283382.1| 6550 g1482 i0 77.117 23.9590834697218 555 117 90 9 1 550 579 1128 PREDICTED: Mytilus edulis calreticulin-like (LOC139495180), mRNA blastn 14639 313 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
23087458 23087458 PRJEB75227_P_NODE_5439_length_299_cov_1.690265_g5268_i0 PRJEB75227 5439 299 1.690265 5.05389235 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.002   NTclustered gi|2912983111|dbj|AP039588.1| 145626 g5268 i0 94.595 0.79933110367893 37 0 12 2 176 211 8646731 8646696 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 7, sequence blastn 239 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;