RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB75227" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB75227 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4823709 4823709 PRJEB75227_P_NODE_4044_length_354_cov_5.288256_g3873_i0 PRJEB75227 4044 354 5.288256 18.72042624 Oligohymenophorea 6020 SAR_Eukaryotes SAR_Eukaryotes 121 9.05e-23   NTclustered gi|194245783|gb|EU828456.1| 5888 g3873 i0 78.462 42.8728813559322 195 35 54 6 165 354 3146 2954 Paramecium tetraurelia large subunit ribosomal RNA gene, complete sequence blastn 15177 121 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
6098837 6098837 PRJEB75227_P_NODE_5025_length_313_cov_1.258333_g4854_i0 PRJEB75227 5025 313 1.258333 3.93858229 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 540 5.13e-149   NTclustered gi|1202135013|gb|KY476314.1| 151077 g4854 i0 97.771 96.14696485623 314 5 100 2 1 313 13 325 Chilodonella uncinata 18S ribosomal RNA gene, partial sequence blastn 30094 540 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
17987195 17987195 PRJEB75227_P_NODE_10755_length_245_cov_0.906977_g10584_i0 PRJEB75227 10755 245 0.906977 2.22209365 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 368 1.93e-97   NTclustered gi|300521444|gb|GQ377690.1| 151077 g10584 i0 94.538 0.971428571428571 238 13 97 0 8 245 452 215 Chilodonella uncinata 14-3-3 protein-like mRNA, partial sequence blastn 238 368 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
21812445 21812445 PRJEB75227_P_NODE_6638_length_278_cov_1.073171_g6467_i0 PRJEB75227 6638 278 1.073171 2.98341538 Caryotricha sinica 2652903 SAR_Eukaryotes SAR_Eukaryotes 122 1.92e-23   NTclustered gi|2328859121|gb|OP828526.1| 2652903 g6467 i0 97.222 26.8345323741007 72 2 26 0 207 278 982 911 Caryotricha sinica isolate LCY2018041109 large subunit ribosomal RNA gene, partial sequence blastn 7460 122 1 Eukaryota Sar   Ciliophora Spirotrichea Kiitrichida Kiitrichidae Caryotricha Caryotricha sinica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;