RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB75227" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJEB75227 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2270778 2270778 PRJEB75227_P_NODE_6142_length_285_cov_1.250000_g5971_i0 PRJEB75227 6142 285 1.25 3.5625 Deinococcus 1298 Bacteria Bacteria 442 1.3399999999999994e-119   NTclustered gi|2264081587|gb|CP094462.1| 1299 g5971 i0 94.718 45.9228070175439 284 15 99 0 1 284 1646017 1645734 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 13088 442 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
2685738 2685738 PRJEB75227_P_NODE_6883_length_273_cov_2.730000_g6712_i0 PRJEB75227 6883 273 2.73 7.4529 Deinococcus radiophilus 32062 Bacteria Bacteria 396 1.0099999999999997e-105   NTclustered gi|2152123021|gb|CP086380.1| 32062 g6712 i0 93.066 214.666666666667 274 14 100 4 1 273 2018566 2018835 Deinococcus radiophilus strain ATCC 27603 chromosome, complete genome blastn 58604 396 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;