RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB75227" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJEB75227 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1410267 1410267 PRJEB75227_P_NODE_8382_length_253_cov_0.866667_g8211_i0 PRJEB75227 8382 253 0.866667 2.19266751 Chloroidium ellipsoideum 63676 Plants Plants 254 5.86e-63   NTclustered gi|294358549|gb|GU732422.1| 63676 g8211 i0 85.039 60.2134387351779 254 33 100 5 1 253 361 610 Pseudochlorella sp. CCAP 211/1A isolate YSR03 28S ribosomal RNA gene, partial sequence blastn 15234 254 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
3961764 3961764 PRJEB75227_P_NODE_1724_length_596_cov_2.271511_g1553_i0 PRJEB75227 1724 596 2.271511 13.53820556 Chlamydomonas reinhardtii 3055 Plants Plants 396 2.36e-105   NTclustered gi|2082235498|ref|XM_001700320.2| 3055 g1553 i0 84.504 63.6778523489933 413 51 69 7 186 596 460 59 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g002300v5), mRNA blastn 37952 396 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5238187 5238187 PRJEB75227_P_NODE_5165_length_308_cov_1.957447_g4994_i0 PRJEB75227 5165 308 1.957447 6.02893676 Chloroidium ellipsoideum 63676 Plants Plants 503 6.6e-138   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g4994 i0 96.104 100.272727272727 308 12 100 0 1 308 2265 1958 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 30884 503 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
14164025 14164025 PRJEB75227_P_NODE_6132_length_285_cov_1.334906_g5961_i0 PRJEB75227 6132 285 1.334906 3.8044821 Chloroidium ellipsoideum 63676 Plants Plants 401 2.2699999999999992e-107   NTclustered gi|1169296931|gb|KY364701.1| 63676 g5961 i0 92.254 101.214035087719 284 20 99 2 1 282 3985 4268 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 28846 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
19261258 19261258 PRJEB75227_P_NODE_956_length_829_cov_1.902116_g801_i0 PRJEB75227 956 829 1.902116 15.76854164 Chlorella variabilis 554065 Plants Plants 520 1.9e-142   NTclustered gi|552830805|ref|XM_005847928.1| 554065 g801 i0 80.284 54.5874547647768 705 126 84 11 118 814 932 233 Chlorella variabilis hypothetical protein (RACK1) mRNA, complete cds blastn 45253 520 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;