RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB75227" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB75227 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6513759 6513759 PRJEB75227_P_NODE_4506_length_335_cov_0.893130_g4335_i0 PRJEB75227 4506 335 0.89313 2.9919855 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 Bacteria Bacteria 446 1.24e-120   NTclustered gi|939198278|gb|CP012665.1| 1704307 g4335 i0 91.212 114.388059701493 330 26 98 3 8 335 15771 15443 Candidatus Xiphinematobacter sp. Idaho Grape, complete genome blastn 38320 446 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria     Candidatus Xiphinematobacter Candidatus Xiphinematobacter sp. Idaho Grape
6513790 6513790 PRJEB75227_P_NODE_9066_length_250_cov_1.322034_g8895_i0 PRJEB75227 9066 250 1.322034 3.305085 Limnoglobus roseus 2598579 Bacteria Bacteria 335 2.0099999999999996e-87   NTclustered gi|1733446852|gb|CP042425.1| 2598579 g8895 i0 90.837 95.908 251 21 100 2 1 250 2956939 2957188 Limnoglobus roseus strain PX52 chromosome, complete genome blastn 23977 335 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Limnoglobus Limnoglobus roseus
11198941 11198941 PRJEB75227_P_NODE_11129_length_244_cov_0.912281_g10958_i0 PRJEB75227 11129 244 0.912281 2.22596564 Gemmataceae 1914233 Bacteria Bacteria 387 5.31e-103   NTclustered gi|12583965|gb|AF245369.1|AF245369 114 g10958 i0 95.455 160.184426229508 242 11 99 0 1 242 2434 2193 Gemmata obscuriglobus 23S ribosomal RNA gene, partial sequence blastn 39085 390 0.992307692307692 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;