RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB75227" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJEB75227 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23087467 23087467 PRJEB75227_P_NODE_6379_length_282_cov_0.827751_g6208_i0 PRJEB75227 6379 282 0.827751 2.33425782 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 193 1.47e-44   NTclustered gi|345452592|gb|JF694314.1| 136459 g6208 i0 79.505 10.7659574468085 283 48 99 10 1 278 741 464 Paraflabellula hoguae strain ATCC 30733 clone 2 actin gene, partial cds blastn 3036 193 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
23087493 23087493 PRJEB75227_P_NODE_9139_length_250_cov_0.881356_g8968_i0 PRJEB75227 9139 250 0.881356 2.20339 Cavenderia fasciculata 261658 Evosea other_Eukaryota 54.7 0.006   NTclustered gi|470249172|ref|XM_004358124.1| 261658 g8968 i0 96.875 0.252 32 1 13 0 18 49 264 233 Cavenderia fasciculata DEAD/DEAH box helicase (BRIP1), partial mRNA blastn 63 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;