RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

28 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 28 ✖

bioproject 1

  • PRJEB75017 · 28 ✖

analysis 1

  • blastn · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1409917 1409917 PRJEB75017_P_NODE_15682_length_248_cov_1.782857_g15553_i0 PRJEB75017 15682 248 1.782857 4.42148536 Caudoviricetes sp. 2832643 Viruses Viruses 459 1.13e-124   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g15553 i0 100 1 248 0 100 0 1 248 48557 48804 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 248 459 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
2685390 2685390 PRJEB75017_P_NODE_12583_length_263_cov_3.647368_g12454_i0 PRJEB75017 12583 263 3.647368 9.59257784 Caudoviricetes sp. 2832643 Viruses Viruses 486 5.5499999999999986e-133   NTclustered gi|2058015093|tpg|BK041823.1| 2832643 g12454 i0 100 99.1901140684411 263 0 100 0 1 263 3157 2895 MAG TPA_asm: Caudoviricetes sp. isolate ctkVl5, partial genome blastn 26087 486 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
2685431 2685431 PRJEB75017_P_NODE_17863_length_243_cov_0.917647_g17734_i0 PRJEB75017 17863 243 0.917647 2.22988221 Alphavirus chikungunya 3426298 Viruses Viruses 449 6.65e-122   NTclustered gi|1194463477|gb|KY435472.1| 37124 g17734 i0 100 100 243 0 100 0 1 243 10850 10608 Chikungunya virus isolate 14.02560 non-structural polypeptide and structural polypeptide genes, complete cds blastn 24300 449 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus chikungunya
7787717 7787717 PRJEB75017_P_NODE_15347_length_249_cov_1.329545_g15218_i0 PRJEB75017 15347 249 1.329545 3.31056705 Moumouvirus australiense 3080759 Viruses Viruses 52.8 0.023   NTclustered gi|2500366567|ref|NC_075368.1| 2109587 g15218 i0 100 0.112449799196787 28 0 11 0 199 226 992735 992708 Moumouvirus australiensis isolate 10A, complete genome blastn 28 52.8 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Moumouvirus Moumouvirus australiense
7787757 7787757 PRJEB75017_P_NODE_2507_length_553_cov_1.156250_g2378_i0 PRJEB75017 2507 553 1.15625 6.3940625 Caudoviricetes sp. 2832643 Viruses Viruses 1022 0   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g2378 i0 100 1 553 0 100 0 1 553 23282 23834 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 553 1022 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
8648713 8648713 PRJEB75017_P_NODE_17787_length_243_cov_1.800000_g17658_i0 PRJEB75017 17787 243 1.8 4.374 root 1 Root_unresolved Root_unresolved 449 6.65e-122   NTclustered gi|27447413|gb|AY102920.1| 11276 g17658 i0 100 100 243 0 100 0 1 243 1542 1300 Vesicular stomatitis virus serotype Indiana panhandle-type defective interfering particle Ind-ST blastn 24300 449 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
9062587 9062587 PRJEB75017_P_NODE_11908_length_270_cov_1.406091_g11779_i0 PRJEB75017 11908 270 1.406091 3.7964457 Caudoviricetes sp. 2832643 Viruses Viruses 494 3.4199999999999996e-135   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g11779 i0 99.63 21.0037037037037 270 1 100 0 1 270 18821 18552 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 5671 494 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
9062629 9062629 PRJEB75017_P_NODE_17288_length_245_cov_0.906977_g17159_i0 PRJEB75017 17288 245 0.906977 2.22209365 Caudoviricetes sp. 2832643 Viruses Viruses 453 5.1900000000000006e-123   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g17159 i0 100 1 245 0 100 0 1 245 40734 40978 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 245 453 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
11198881 11198881 PRJEB75017_P_NODE_4329_length_421_cov_1.117816_g4200_i0 PRJEB75017 4329 421 1.117816 4.70600536 root 1 Root_unresolved Root_unresolved 778 0   NTclustered gi|2649349941|gb|OR995580.1| 11276 g4200 i0 100 99.9857482185273 421 0 100 0 1 421 2566 2986 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 42094 778 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
11198890 11198890 PRJEB75017_P_NODE_9309_length_297_cov_1.392857_g9180_i0 PRJEB75017 9309 297 1.392857 4.13678529 root 1 Root_unresolved Root_unresolved 549 8.029999999999997e-152   NTclustered gi|2649349941|gb|OR995580.1| 11276 g9180 i0 100 100 297 0 100 0 1 297 8098 8394 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 29700 549 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
11613845 11613845 PRJEB75017_P_NODE_17210_length_245_cov_0.906977_g17081_i0 PRJEB75017 17210 245 0.906977 2.22209365 Caudoviricetes sp. 2832643 Viruses Viruses 425 1.1299999999999999e-114   NTclustered gi|2054564519|tpg|BK048315.1| 2832643 g17081 i0 97.959 3.92244897959184 245 5 100 0 1 245 44153 43909 MAG TPA_asm: Caudoviricetes sp. isolate ctdG41, partial genome blastn 961 425 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
12888914 12888914 PRJEB75017_P_NODE_17591_length_244_cov_0.912281_g17462_i0 PRJEB75017 17591 244 0.912281 2.22596564 Caudoviricetes sp. 2832643 Viruses Viruses 451 1.86e-122   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g17462 i0 100 1 244 0 100 0 1 244 19182 19425 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 244 451 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
12888972 12888972 PRJEB75017_P_NODE_7111_length_335_cov_0.839695_g6982_i0 PRJEB75017 7111 335 0.839695 2.81297825 Betacoronavirus pandemicum 3418604 Viruses Viruses 614 3.209999999999999e-171   NTclustered gi|2441312974|gb|OQ403814.1| 2697049 g6982 i0 99.701 100 335 1 100 0 1 335 11441 11775 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MD-CDC-LC1001502/2023, complete genome blastn 33500 614 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12888982 12888982 PRJEB75017_P_NODE_8871_length_303_cov_1.265217_g8742_i0 PRJEB75017 8871 303 1.265217 3.83360751 Xanthomonas phage PBR31 2718947 Viruses Viruses 209 1.58e-49   NTclustered gi|1822268303|gb|MT119766.1| 2718947 g8742 i0 82.845 1.05610561056106 239 35 78 5 57 292 30529 30294 Xanthomonas phage PBR31, complete genome blastn 320 209 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Xanthomonas phage PBR31
14163700 14163700 PRJEB75017_P_NODE_10272_length_286_cov_1.455399_g10143_i0 PRJEB75017 10272 286 1.455399 4.16244114 Caudoviricetes sp. 2832643 Viruses Viruses 529 1e-145   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g10143 i0 100 1 286 0 100 0 1 286 17938 18223 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 286 529 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
14163832 14163832 PRJEB75017_P_NODE_9212_length_298_cov_2.702222_g9083_i0 PRJEB75017 9212 298 2.702222 8.05262156 Caudoviricetes sp. 2832643 Viruses Viruses 551 2.239999999999999e-152   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g9083 i0 100 1 298 0 100 0 1 298 46315 46612 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 298 551 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
15023483 15023483 PRJEB75017_P_NODE_18072_length_243_cov_0.917647_g17943_i0 PRJEB75017 18072 243 0.917647 2.22988221 root 1 Root_unresolved Root_unresolved 449 6.65e-122   NTclustered gi|2649349941|gb|OR995580.1| 11276 g17943 i0 100 100 243 0 100 0 1 243 724 482 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 24300 449 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
16712085 16712085 PRJEB75017_P_NODE_5574_length_372_cov_2.531773_g5445_i0 PRJEB75017 5574 372 2.531773 9.41819556 Tupanvirus salinum 3060758 Viruses Viruses 104 9.63e-18   NTclustered gi|2500358058|ref|NC_075039.1| 2126985 g5445 i0 83.636 0.779569892473118 110 18 30 0 2 111 451348 451457 Tupanvirus soda lake, partial genome blastn 290 104 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Tupanvirus Tupanvirus salinum
17573483 17573483 PRJEB75017_P_NODE_9534_length_294_cov_1.058824_g9405_i0 PRJEB75017 9534 294 1.058824 3.11294256 Skunavirus 1623305 Viruses Viruses 544 3.69e-150   NTclustered gi|948516195|gb|KP793116.1| 1636559 g9405 i0 100 97.1156462585034 294 0 100 0 1 294 18285 18578 Lactococcus phage 936 group phage Phi13.16, complete genome blastn 28552 544 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Skunavirus Lactococcus phage 936 group phage Phi13.16
17986879 17986879 PRJEB75017_P_NODE_10835_length_280_cov_10.033816_g10706_i0 PRJEB75017 10835 280 10.033816 28.0946848 Mitovirus sp. 2587224 Viruses Viruses 124 5.39e-24   NTclustered gi|1698234317|gb|MN033515.1| 2587224 g10706 i0 92.045 0.314285714285714 88 7 31 0 173 260 111 24 MAG: Mitovirus sp. isolate H1_Rhizo_26_FD_scaffold_6751 sequence blastn 88 124 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Mitovirus sp.
17986883 17986883 PRJEB75017_P_NODE_11435_length_275_cov_1.158416_g11306_i0 PRJEB75017 11435 275 1.158416 3.185644 Caudoviricetes sp. 2832643 Viruses Viruses 508 1.2499999999999999e-139   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g11306 i0 100 1 275 0 100 0 1 275 50453 50179 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 275 508 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
17986890 17986890 PRJEB75017_P_NODE_12035_length_269_cov_1.321429_g11906_i0 PRJEB75017 12035 269 1.321429 3.55464401 Betacoronavirus pandemicum 3418604 Viruses Viruses 497 2.63e-136   NTclustered gi|2316342856|gb|OP624554.1| 2697049 g11906 i0 100 100 269 0 100 0 1 269 24586 24318 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome blastn 26900 497 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
17986901 17986901 PRJEB75017_P_NODE_13335_length_256_cov_1.704918_g13206_i0 PRJEB75017 13335 256 1.704918 4.36459008 Caudoviricetes sp. 2832643 Viruses Viruses 473 4.189999999999999e-129   NTclustered gi|2058123527|tpg|BK033972.1| 2832643 g13206 i0 100 1 256 0 100 0 1 256 22414 22159 MAG TPA_asm: Caudoviricetes sp. isolate ct2Fx2, partial genome blastn 256 473 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
18847296 18847296 PRJEB75017_P_NODE_9575_length_293_cov_1.854545_g9446_i0 PRJEB75017 9575 293 1.854545 5.43381685 root 1 Root_unresolved Root_unresolved 536 6.149999999999998e-148   NTclustered gi|2649349941|gb|OR995580.1| 11276 g9446 i0 99.659 100 293 1 100 0 1 293 6685 6977 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 29300 536 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
19260940 19260940 PRJEB75017_P_NODE_16836_length_246_cov_0.901734_g16707_i0 PRJEB75017 16836 246 0.901734 2.21826564 Caudoviricetes sp. 2832643 Viruses Viruses 455 1.4500000000000002e-123   NTclustered gi|2914760312|gb|OR221747.1| 2832643 g16707 i0 100 6.1260162601626 246 0 100 0 1 246 7404 7159 MAG: Caudoviricetes sp. isolate MSP1289 genomic sequence blastn 1507 455 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
20122073 20122073 PRJEB75017_P_NODE_11496_length_274_cov_1.631841_g11367_i0 PRJEB75017 11496 274 1.631841 4.47124434 root 1 Root_unresolved Root_unresolved 501 2.08e-137   NTclustered gi|27447413|gb|AY102920.1| 11276 g11367 i0 99.635 100 274 1 100 0 1 274 161 434 Vesicular stomatitis virus serotype Indiana panhandle-type defective interfering particle Ind-ST blastn 27400 501 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
21812088 21812088 PRJEB75017_P_NODE_12858_length_261_cov_1.260638_g12729_i0 PRJEB75017 12858 261 1.260638 3.29026518 Betacoronavirus pandemicum 3418604 Viruses Viruses 483 7.12e-132   NTclustered gi|2486544531|gb|OP232863.2| 2697049 g12729 i0 100 100 261 0 100 0 1 261 1736 1476 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-UPHL-220730839479/2022 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 26100 483 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
24361121 24361121 PRJEB75017_P_NODE_11520_length_274_cov_1.522388_g11391_i0 PRJEB75017 11520 274 1.522388 4.17134312 Lentivirus felimdef 3418649 Viruses Viruses 52.8 0.025   NTclustered gi|635009863|gb|KF906147.1| 11673 g11391 i0 96.774 0.113138686131387 31 1 11 0 6 36 1119 1149 Feline immunodeficiency virus isolate Lru5 gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif) and env protein (env) genes, complete cds blastn 31 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus felimdef

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;