RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75017 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2685437 2685437 PRJEB75017_P_NODE_183_length_1635_cov_4.533931_g152_i0 PRJEB75017 183 1635 4.533931 74.12977185 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 2449 0   NTclustered gi|226525339|gb|FJ872375.1| 156588 g152 i0 93.723 233.458103975535 1641 92 100 10 1 1635 28645 27010 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 381704 2449 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
19260885 19260885 PRJEB75017_P_NODE_10736_length_282_cov_1.119617_g10607_i0 PRJEB75017 10736 282 1.119617 3.15731994 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 52.8 0.026   NTclustered gi|2874254096|emb|OY970179.1| 412056 g10607 i0 96.774 0.109929078014184 31 1 11 0 165 195 782666 782696 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 31 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
19260900 19260900 PRJEB75017_P_NODE_12036_length_269_cov_1.311224_g11907_i0 PRJEB75017 12036 269 1.311224 3.52719256 Akkermansia glycaniphila 1679444 Bacteria Bacteria 206 1.7899999999999998e-48   NTclustered gi|1093279401|emb|LT629973.1| 1679444 g11907 i0 84 88.9739776951673 225 24 81 9 46 264 1727839 1727621 Akkermansia glycaniphila isolate APytT genome assembly, chromosome: I blastn 23934 206 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia glycaniphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;