RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75017 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11198887 11198887 PRJEB75017_P_NODE_8149_length_315_cov_0.966942_g8020_i0 PRJEB75017 8149 315 0.966942 3.0458673 Schistosoma 6181 Platyhelminthes Platyhelminthes 239 2.11e-58   NTclustered gi|1084312253|ref|XM_018795509.1| 6183 g8020 i0 82.007 26.2253968253968 289 44 90 7 31 315 1686 1402 Schistosoma mansoni myosin heavy chain, putative partial mRNA blastn 8261 239 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
12888957 12888957 PRJEB75017_P_NODE_531_length_1121_cov_3.121183_g459_i0 PRJEB75017 531 1121 3.121183 34.98846143 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 625 5.359999999999999e-174   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g459 i0 85.289 9.05263157894737 605 89 80 0 356 960 605 1 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 10148 625 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
17986922 17986922 PRJEB75017_P_NODE_15395_length_249_cov_0.886364_g15266_i0 PRJEB75017 15395 249 0.886364 2.20704636 Dugesia japonica 6161 Platyhelminthes Platyhelminthes 224 4.5099999999999996e-54   NTclustered gi|326417553|gb|HM204940.1| 6161 g15266 i0 86.634 24.9718875502008 202 27 81 0 36 237 11 212 Dugesia japonica Rho2 GTPase mRNA, complete cds blastn 6218 224 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Dugesia Dugesia japonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;