RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75017 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
135318 135318 PRJEB75017_P_NODE_11361_length_276_cov_0.931034_g11232_i0 PRJEB75017 11361 276 0.931034 2.56965384 Phycisphaeraceae bacterium D3-23 3004190 Bacteria Bacteria 52.8 0.025   NTclustered gi|2727577647|gb|CP114179.1| 3004190 g11232 i0 92.105 0.13768115942029 38 1 14 2 1 38 2581670 2581705 Phycisphaeraceae bacterium D3-23 chromosome, complete genome blastn 38 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium D3-23
9062632 9062632 PRJEB75017_P_NODE_17628_length_244_cov_0.912281_g17499_i0 PRJEB75017 17628 244 0.912281 2.22596564 Gemmata sp. SH-PL17 1630693 Bacteria Bacteria 52.8 0.022   NTclustered gi|1015440974|gb|CP011271.1| 1630693 g17499 i0 100 0.114754098360656 28 0 11 0 68 95 3272398 3272371 Gemmata sp. SH-PL17, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata sp. SH-PL17
14163721 14163721 PRJEB75017_P_NODE_12812_length_261_cov_1.909574_g12683_i0 PRJEB75017 12812 261 1.909574 4.98398814 Aquisphaera giovannonii 406548 Bacteria Bacteria 198 2.89e-46   NTclustered gi|1730068067|gb|CP042997.1| 406548 g12683 i0 81.124 1.8735632183908 249 45 95 2 1 248 4479127 4479374 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 489 198 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;