RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75017 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7787828 7787828 PRJEB75017_P_NODE_9987_length_289_cov_1.365741_g9858_i0 PRJEB75017 9987 289 1.365741 3.94699149 Strongyloides ratti 34506 Nematoda Nematoda 183 9.089999999999997e-42   NTclustered gi|1376143463|ref|XM_024652111.1| 34506 g9858 i0 80.851 16.5743944636678 235 43 81 2 3 236 296 63 Strongyloides ratti Histone H2A domain and Histone core domain and Histone-fold domain-containing protein (SRAE_2000118900), partial mRNA blastn 4790 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
9062592 9062592 PRJEB75017_P_NODE_12168_length_268_cov_1.164103_g12039_i0 PRJEB75017 12168 268 1.164103 3.11979604 Strongyloides ratti 34506 Nematoda Nematoda 219 2.2899999999999998e-52   NTclustered gi|1376152089|ref|XM_024644563.1| 34506 g12039 i0 81.481 100.589552238806 270 46 100 4 1 268 442 709 Strongyloides ratti Calcium/calmodulin-dependent protein kinase type II subunit delta (SRAE_X000024300), partial mRNA blastn 26958 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
20122083 20122083 PRJEB75017_P_NODE_18616_length_241_cov_5.172619_g18487_i0 PRJEB75017 18616 241 5.172619 12.46601179 Rhabditida 6236 Nematoda Nematoda 241 4.310000000000001e-59   NTclustered gi|38491404|gb|AY372758.1| 27828 g18487 i0 84.647 96.551867219917 241 37 100 0 1 241 281 41 Cooperia oncophora actin mRNA, complete cds blastn 23269 241 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;