RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB75017 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8648713 8648713 PRJEB75017_P_NODE_17787_length_243_cov_1.800000_g17658_i0 PRJEB75017 17787 243 1.8 4.374 root 1 Root_unresolved Root_unresolved 449 6.65e-122   NTclustered gi|27447413|gb|AY102920.1| 11276 g17658 i0 100 100 243 0 100 0 1 243 1542 1300 Vesicular stomatitis virus serotype Indiana panhandle-type defective interfering particle Ind-ST blastn 24300 449 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
11198881 11198881 PRJEB75017_P_NODE_4329_length_421_cov_1.117816_g4200_i0 PRJEB75017 4329 421 1.117816 4.70600536 root 1 Root_unresolved Root_unresolved 778 0   NTclustered gi|2649349941|gb|OR995580.1| 11276 g4200 i0 100 99.9857482185273 421 0 100 0 1 421 2566 2986 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 42094 778 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
11198890 11198890 PRJEB75017_P_NODE_9309_length_297_cov_1.392857_g9180_i0 PRJEB75017 9309 297 1.392857 4.13678529 root 1 Root_unresolved Root_unresolved 549 8.029999999999997e-152   NTclustered gi|2649349941|gb|OR995580.1| 11276 g9180 i0 100 100 297 0 100 0 1 297 8098 8394 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 29700 549 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
15023483 15023483 PRJEB75017_P_NODE_18072_length_243_cov_0.917647_g17943_i0 PRJEB75017 18072 243 0.917647 2.22988221 root 1 Root_unresolved Root_unresolved 449 6.65e-122   NTclustered gi|2649349941|gb|OR995580.1| 11276 g17943 i0 100 100 243 0 100 0 1 243 724 482 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 24300 449 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
18847296 18847296 PRJEB75017_P_NODE_9575_length_293_cov_1.854545_g9446_i0 PRJEB75017 9575 293 1.854545 5.43381685 root 1 Root_unresolved Root_unresolved 536 6.149999999999998e-148   NTclustered gi|2649349941|gb|OR995580.1| 11276 g9446 i0 99.659 100 293 1 100 0 1 293 6685 6977 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 29300 536 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
20122073 20122073 PRJEB75017_P_NODE_11496_length_274_cov_1.631841_g11367_i0 PRJEB75017 11496 274 1.631841 4.47124434 root 1 Root_unresolved Root_unresolved 501 2.08e-137   NTclustered gi|27447413|gb|AY102920.1| 11276 g11367 i0 99.635 100 274 1 100 0 1 274 161 434 Vesicular stomatitis virus serotype Indiana panhandle-type defective interfering particle Ind-ST blastn 27400 501 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;