RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB75017 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8648707 8648707 PRJEB75017_P_NODE_16107_length_247_cov_1.752874_g15978_i0 PRJEB75017 16107 247 1.752874 4.32959878 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.022   NTclustered gi|330843038|ref|XM_003293424.1| 5786 g15978 i0 100 0.676113360323887 28 0 11 0 220 247 782 809 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_158333), partial mRNA blastn 167 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
14163716 14163716 PRJEB75017_P_NODE_12292_length_266_cov_1.777202_g12163_i0 PRJEB75017 12292 266 1.777202 4.72735732 Entamoeba nuttalli 412467 Evosea other_Eukaryota 268 2.22e-67   NTclustered gi|672804637|ref|XM_008859135.1| 1076696 g12163 i0 85.075 45.4210526315789 268 35 99 5 1 265 415 150 Entamoeba nuttalli P19 Ran family GTPase partial mRNA blastn 12082 268 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba nuttalli
16712032 16712032 PRJEB75017_P_NODE_16174_length_247_cov_1.344828_g16045_i0 PRJEB75017 16174 247 1.344828 3.32172516 Dictyostelium discoideum 44689 Evosea other_Eukaryota 243 1.23e-59   NTclustered gi|66820585|ref|XM_638794.1| 352472 g16045 i0 85.714 0.935222672064777 231 31 93 2 1 230 634 863 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0274775) mRNA, complete cds blastn 231 243 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17573472 17573472 PRJEB75017_P_NODE_16734_length_246_cov_0.901734_g16605_i0 PRJEB75017 16734 246 0.901734 2.21826564 Dictyostelium 5782 Evosea other_Eukaryota 276 1.21e-69   NTclustered gi|167579|gb|M14146.1|DDIACT15 44689 g16605 i0 87.19 65.4105691056911 242 31 98 0 5 246 1388 1147 D.discoideum actin 15 gene, complete cds blastn 16091 276 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;