RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB75017 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12888953 12888953 PRJEB75017_P_NODE_4951_length_395_cov_1.388199_g4822_i0 PRJEB75017 4951 395 1.388199 5.48338605 Nitzschia sp. IriIs04 1444690 SAR_Eukaryotes SAR_Eukaryotes 228 5.849999999999999e-55   NTclustered gi|944186118|dbj|LC052646.1| 1444690 g4822 i0 79.511 59.8708860759494 327 61 82 5 64 387 1489 1812 Nitzschia sp. IriIs04 hCdc48-1 mRNA for host cell division cycle protein, complete cds blastn 23649 228 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia sp. IriIs04
20536332 20536332 PRJEB75017_P_NODE_6617_length_345_cov_1.382353_g6488_i0 PRJEB75017 6617 345 1.382353 4.76911785 Cocconeiopsis kantsiensis 3082010 SAR_Eukaryotes SAR_Eukaryotes 604 1.9999999999999992e-168   NTclustered gi|2692958229|ref|NC_086886.1| 3082010 g6488 i0 98.261 197.063768115942 345 6 100 0 1 345 82129 82473 Cocconeiopsis kantsiensis chloroplast, complete genome blastn 67987 604 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cocconeidales Cocconeidaceae Cocconeiopsis Cocconeiopsis kantsiensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;