RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJEB75017 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1409880 1409880 PRJEB75017_P_NODE_10122_length_288_cov_1.032558_g9993_i0 PRJEB75017 10122 288 1.032558 2.97376704 Monoraphidium neglectum 145388 Plants Plants 171 7.05e-38   NTclustered gi|926781969|ref|XM_014044005.1| 145388 g9993 i0 81.34 4.35416666666667 209 39 73 0 2 210 802 1010 Monoraphidium neglectum H+-transporting ATPase mRNA blastn 1254 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
3546114 3546114 PRJEB75017_P_NODE_11183_length_277_cov_2.294118_g11054_i0 PRJEB75017 11183 277 2.294118 6.35470686 Eukaryota 2759 Plants Plants 182 3.12e-41   NTclustered gi|2082239390|ref|XM_001699982.2| 3055 g11054 i0 83.249 13.6642599277978 197 33 71 0 68 264 704 900 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g098450v5), mRNA blastn 3785 183 0.994535519125683 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
3546122 3546122 PRJEB75017_P_NODE_15723_length_248_cov_1.337143_g15594_i0 PRJEB75017 15723 248 1.337143 3.31611464 root 1 Root_unresolved Root_unresolved 178 3.5499999999999993e-40   NTclustered gi|760443040|ref|XM_011400287.1| 3075 g15594 i0 80.417 96.0887096774194 240 42 96 5 2 240 839 604 Auxenochlorella protothecoides Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial partial mRNA blastn 23830 178 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
15023486 15023486 PRJEB75017_P_NODE_2552_length_549_cov_1.308824_g2423_i0 PRJEB75017 2552 549 1.308824 7.18544376 Eukaryota 2759 Plants Plants 377 7.85e-100   NTclustered gi|2082257783|ref|XM_001698358.2| 3055 g2423 i0 79.584 56.799635701275 529 106 96 2 2 529 1134 1661 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g461050v5), mRNA blastn 31183 377 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16712071 16712071 PRJEB75017_P_NODE_4214_length_427_cov_1.322034_g4085_i0 PRJEB75017 4214 427 1.322034 5.64508518 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.003   NTclustered gi|2082235889|ref|XM_001700244.2| 3055 g4085 i0 100 0.0702576112412178 30 0 7 0 248 277 2266 2295 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g009400v5), mRNA blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19260956 19260956 PRJEB75017_P_NODE_1896_length_628_cov_5.234234_g1769_i0 PRJEB75017 1896 628 5.234234 32.87098952 Tetradesmus lancea 3073545 Plants Plants 324 1.2e-83   NTclustered gi|2575031379|gb|OR530171.1| 3073545 g1769 i0 80.574 47.1894904458599 453 60 69 20 1 436 4695 5136 Tetradesmus sp. JML-2023b small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29635 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus lancea
23087114 23087114 PRJEB75017_P_NODE_1299_length_755_cov_3.435484_g1180_i0 PRJEB75017 1299 755 3.435484 25.9379042 Chlamydomonas reinhardtii 3055 Plants Plants 416 2.33e-111   NTclustered gi|2082235498|ref|XM_001700320.2| 3055 g1180 i0 84.906 50.5284768211921 424 51 56 7 43 464 48 460 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g002300v5), mRNA blastn 38149 416 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
25221726 25221726 PRJEB75017_P_NODE_4280_length_423_cov_3.302857_g4151_i0 PRJEB75017 4280 423 3.302857 13.97108511 Chlorophyta 3041 Plants Plants 311 6.09e-80   NTclustered gi|224593220|gb|FJ715708.1| 3055 g4151 i0 82.058 21.903073286052 379 54 88 11 52 423 6 377 Chlamydomonas reinhardtii strain CC1690 translation elongation factor-like protein mRNA, partial cds blastn 9265 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;