RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJEB75017 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7787703 7787703 PRJEB75017_P_NODE_14107_length_252_cov_1.407821_g13978_i0 PRJEB75017 14107 252 1.407821 3.54770892 Thecamonas trahens 529818 Root_unresolved Root_unresolved 172 1.68e-38   NTclustered gi|923124038|ref|XM_013900034.1| 461836 g13978 i0 81.308 17.1547619047619 214 38 85 2 4 216 930 1142 Thecamonas trahens ATCC 50062 seryl-tRNA synthetase (AMSG_08432), mRNA blastn 4323 172 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
17986913 17986913 PRJEB75017_P_NODE_14415_length_252_cov_0.871508_g14286_i0 PRJEB75017 14415 252 0.871508 2.19620016 Thecamonas trahens 529818 Root_unresolved Root_unresolved 250 7.55e-62   NTclustered gi|923138884|ref|XM_013907453.1| 461836 g14286 i0 88.725 17.7103174603175 204 23 81 0 47 250 608 405 Thecamonas trahens ATCC 50062 elongation factor 2 (AMSG_00036), mRNA blastn 4463 250 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;