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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJEB75017" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 14 ✖

bioproject 1

  • PRJEB75017 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
135398 135398 PRJEB75017_P_NODE_441_length_1203_cov_12.205310_g376_i0 PRJEB75017 441 1203 12.20531 146.8298793 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 893 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g376 i0 94.511 32.1886949293433 583 25 81 5 511 1087 582 1 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 38723 893 1 Eukaryota Amoebozoa             uncultured Amoebozoa
2270693 2270693 PRJEB75017_P_NODE_4242_length_425_cov_4.903409_g4113_i0 PRJEB75017 4242 425 4.903409 20.83948825 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 1.42e-26   NTclustered gi|300078496|gb|GU001158.1| 5778 g4113 i0 89.623 21.5529411764706 106 10 25 1 7 112 883 987 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9160 135 0.992592592592593 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7787807 7787807 PRJEB75017_P_NODE_7187_length_333_cov_1.188462_g7058_i0 PRJEB75017 7187 333 1.188462 3.95757846 Platyamoeba placida 3454475 Discosea other_Eukaryota 455 2.05e-123   NTclustered gi|33946348|gb|AY294153.1| 197527 g7058 i0 91.291 99.0960960960961 333 29 100 0 1 333 538 870 Platyamoeba placida actin mRNA, partial cds blastn 32999 455 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
8648707 8648707 PRJEB75017_P_NODE_16107_length_247_cov_1.752874_g15978_i0 PRJEB75017 16107 247 1.752874 4.32959878 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.022   NTclustered gi|330843038|ref|XM_003293424.1| 5786 g15978 i0 100 0.676113360323887 28 0 11 0 220 247 782 809 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_158333), partial mRNA blastn 167 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
12888903 12888903 PRJEB75017_P_NODE_151_length_1736_cov_6.110643_g121_i0 PRJEB75017 151 1736 6.110643 106.08076248 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 2741 0   NTclustered gi|330902846|gb|JF298250.1| 703021 g121 i0 97.979 48.3945852534562 1583 25 91 7 159 1736 2176 596 Cochliopodium actinophorum clone 1201 18S ribosomal RNA gene, partial sequence blastn 84013 2741 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
12888977 12888977 PRJEB75017_P_NODE_7511_length_326_cov_4.086957_g7382_i0 PRJEB75017 7511 326 4.086957 13.32347982 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 87.9 8.4e-13   NTclustered gi|300078497|gb|GU001159.1| 200886 g7382 i0 78.571 0.429447852760736 140 24 42 5 189 326 4312 4177 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 140 87.9 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
12888987 12888987 PRJEB75017_P_NODE_9691_length_292_cov_1.301370_g9562_i0 PRJEB75017 9691 292 1.30137 3.8000004 Paravannella minima 1443144 Discosea other_Eukaryota 139 2.02e-28   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g9562 i0 86.26 0.448630136986301 131 14 44 4 1 128 31909 32038 Paravannella minima mitochondrion, complete genome blastn 131 139 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
14163716 14163716 PRJEB75017_P_NODE_12292_length_266_cov_1.777202_g12163_i0 PRJEB75017 12292 266 1.777202 4.72735732 Entamoeba nuttalli 412467 Evosea other_Eukaryota 268 2.22e-67   NTclustered gi|672804637|ref|XM_008859135.1| 1076696 g12163 i0 85.075 45.4210526315789 268 35 99 5 1 265 415 150 Entamoeba nuttalli P19 Ran family GTPase partial mRNA blastn 12082 268 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba nuttalli
15437903 15437903 PRJEB75017_P_NODE_7913_length_319_cov_1.292683_g7784_i0 PRJEB75017 7913 319 1.292683 4.12365877 Vannella persistens 303303 Discosea other_Eukaryota 579 1.1099999999999996e-160   NTclustered gi|165968549|gb|EU377589.1| 303303 g7784 i0 99.373 99.3699059561129 319 2 100 0 1 319 331 649 Vannella persistens strain CRIB49 18S ribosomal RNA gene, partial sequence blastn 31699 579 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella persistens
16712013 16712013 PRJEB75017_P_NODE_1394_length_732_cov_6.836115_g1273_i0 PRJEB75017 1394 732 6.836115 50.0403618 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 1059 0   NTclustered gi|330902845|gb|JF298249.1| 703021 g1273 i0 98.505 50.655737704918 602 6 82 3 131 732 4 602 Cochliopodium actinophorum clone 1202 18S ribosomal RNA gene, partial sequence blastn 37080 1059 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
16712032 16712032 PRJEB75017_P_NODE_16174_length_247_cov_1.344828_g16045_i0 PRJEB75017 16174 247 1.344828 3.32172516 Dictyostelium discoideum 44689 Evosea other_Eukaryota 243 1.23e-59   NTclustered gi|66820585|ref|XM_638794.1| 352472 g16045 i0 85.714 0.935222672064777 231 31 93 2 1 230 634 863 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0274775) mRNA, complete cds blastn 231 243 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17573472 17573472 PRJEB75017_P_NODE_16734_length_246_cov_0.901734_g16605_i0 PRJEB75017 16734 246 0.901734 2.21826564 Dictyostelium 5782 Evosea other_Eukaryota 276 1.21e-69   NTclustered gi|167579|gb|M14146.1|DDIACT15 44689 g16605 i0 87.19 65.4105691056911 242 31 98 0 5 246 1388 1147 D.discoideum actin 15 gene, complete cds blastn 16091 276 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20122084 20122084 PRJEB75017_P_NODE_2056_length_608_cov_4.371963_g1929_i0 PRJEB75017 2056 608 4.371963 26.58153504 Vexillifera 218659 Root_unresolved Root_unresolved 492 2.99e-134   NTclustered gi|221185864|gb|FJ577811.1| 590481 g1929 i0 84.843 38.6069078947368 508 56 80 16 1 489 1332 1837 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 23473 492 1 Eukaryota Amoebozoa             uncultured Amoebozoa
24361242 24361242 PRJEB75017_P_NODE_800_length_937_cov_6.237269_g707_i0 PRJEB75017 800 937 6.237269 58.44321053 Platyamoeba placida 3454475 Discosea other_Eukaryota 1238 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g707 i0 90.502 99.0640341515475 937 89 100 0 1 937 1024 88 Platyamoeba placida actin mRNA, partial cds blastn 92823 1238 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;