RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB7366" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB7366 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10338336 10338336 PRJEB7366_P_NODE_749_length_1111_cov_11.751859_g549_i0 PRJEB7366 749 1111 11.751859 130.56315349 Amoeba proteus 5775 Tubulinea other_Eukaryota 1086 0   NTclustered gi|33946362|gb|AY294160.1| 5775 g549 i0 84.338 96.1458145814581 1111 172 99 2 1 1110 3 1112 Amoeba proteus actin mRNA, complete cds blastn 106818 1086 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
14163647 14163647 PRJEB7366_P_NODE_1592_length_783_cov_4.573529_g1273_i0 PRJEB7366 1592 783 4.573529 35.81073207 Chaos carolinense 160823 Tubulinea other_Eukaryota 640 1.32e-178   NTclustered gi|33946356|gb|AY294157.1| 160823 g1273 i0 81.481 94.8569604086845 783 142 99 3 1 781 55 836 Chaos carolinense actin mRNA, partial cds blastn 74273 640 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
14163688 14163688 PRJEB7366_P_NODE_7452_length_317_cov_1.294326_g7018_i0 PRJEB7366 7452 317 1.294326 4.10301342 Copromyxa protea 931554 Tubulinea other_Eukaryota 315 3.4299999999999993e-81   NTclustered gi|508737347|dbj|AB766053.1| 931554 g7018 i0 85.859 0.936908517350158 297 40 93 2 12 307 1090 1385 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 297 315 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;