RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB7366" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB7366 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1409843 1409843 PRJEB7366_P_NODE_22202_length_160_cov_1.280000_g21768_i0 PRJEB7366 22202 160 1.28 2.048 Phytopythium sindhum 795340 SAR_Eukaryotes SAR_Eukaryotes 78.7 2.19e-10   NTclustered gi|440919558|gb|JX436356.1| 795340 g21768 i0 94.118 1.48125 51 3 32 0 91 141 438 388 Phytopythium sindhum axoneme central apparatus PF16 gene, partial cds blastn 237 78.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium sindhum
6513348 6513348 PRJEB7366_P_NODE_1866_length_718_cov_12.525622_g1527_i0 PRJEB7366 1866 718 12.525622 89.93396596 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.02   NTclustered gi|170285697|emb|CU672270.3| 123356 g1527 i0 100 0.0403899721448468 29 0 4 0 683 711 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
6513391 6513391 PRJEB7366_P_NODE_6406_length_348_cov_10.821086_g5972_i0 PRJEB7366 6406 348 10.821086 37.65737928 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.009   NTclustered gi|170285697|emb|CU672270.3| 123356 g5972 i0 100 0.0833333333333333 29 0 8 0 313 341 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
7787644 7787644 PRJEB7366_P_NODE_3187_length_531_cov_9.336694_g2780_i0 PRJEB7366 3187 531 9.336694 49.57784514 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 237 1.34e-57   NTclustered gi|695460914|ref|XM_009539807.1| 67593 g2780 i0 91.329 32.7815442561205 173 15 33 0 1 173 182 354 Phytophthora sojae hypothetical protein mRNA blastn 17407 237 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
10338304 10338304 PRJEB7366_P_NODE_22809_length_157_cov_2.295082_g22375_i0 PRJEB7366 22809 157 2.295082 3.60327874 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.013   NTclustered gi|813155594|ref|XM_012346002.1| 695850 g22375 i0 100 0.178343949044586 28 0 18 0 95 122 194 167 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
10338314 10338314 PRJEB7366_P_NODE_2549_length_605_cov_9.538596_g2160_i0 PRJEB7366 2549 605 9.538596 57.7085058 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.017   NTclustered gi|170285697|emb|CU672270.3| 123356 g2160 i0 100 0.0479338842975207 29 0 5 0 154 182 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
23948033 23948033 PRJEB7366_P_NODE_11719_length_237_cov_1.747525_g11285_i0 PRJEB7366 11719 237 1.747525 4.14163425 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 176 1.21e-39   NTclustered gi|2794916836|ref|XM_067893665.1| 164328 g11285 i0 84.153 5.60337552742616 183 27 77 2 56 237 413 232 Phytophthora ramorum Elongator complex protein 3 (KRP23_8248), partial mRNA blastn 1328 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;