RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB7366" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB7366 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3961323 3961323 PRJEB7366_P_NODE_10464_length_255_cov_1.813636_g10030_i0 PRJEB7366 10464 255 1.813636 4.6247718 Caenorhabditis remanei 31234 Nematoda Nematoda 176 1.32e-39   NTclustered gi|2445378119|ref|XM_003100380.2| 31234 g10030 i0 85.294 42.0862745098039 170 25 67 0 4 173 194 25 Caenorhabditis remanei uncharacterized protein (GCK72_016568), partial mRNA blastn 10732 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
6513335 6513335 PRJEB7366_P_NODE_1406_length_833_cov_14.857143_g1081_i1 PRJEB7366 1406 833 14.857143 123.76000119 Caenorhabditis elegans 6239 Nematoda Nematoda 182 1.02e-40   NTclustered gi|1972261274|ref|NM_001384026.2| 6239 g1081 i1 80.591 10.2761104441777 237 44 28 2 216 451 138 373 Caenorhabditis elegans ATP synthase c subunit (Y82E9BR.3), mRNA blastn 8560 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9062506 9062506 PRJEB7366_P_NODE_1368_length_845_cov_14.261728_g1081_i0 PRJEB7366 1368 845 14.261728 120.5116016 Caenorhabditis elegans 6239 Nematoda Nematoda 182 1.04e-40   NTclustered gi|1972261274|ref|NM_001384026.2| 6239 g1081 i0 80.591 10.1301775147929 237 44 28 2 395 630 373 138 Caenorhabditis elegans ATP synthase c subunit (Y82E9BR.3), mRNA blastn 8560 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14163684 14163684 PRJEB7366_P_NODE_6292_length_352_cov_2.839117_g5859_i0 PRJEB7366 6292 352 2.839117 9.99369184 Strongyloides ratti 34506 Nematoda Nematoda 56.5 0.003   NTclustered gi|1376142617|ref|XM_024651632.1| 34506 g5859 i0 100 0.215909090909091 30 0 9 0 116 145 1462 1491 Strongyloides ratti MIP20649p (SRAE_2000076000), partial mRNA blastn 76 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14163692 14163692 PRJEB7366_P_NODE_872_length_1046_cov_2.316518_g650_i0 PRJEB7366 872 1046 2.316518 24.23077828 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.008   NTclustered gi|690018474|emb|LM525712.1| 174720 g650 i0 100 0.0286806883365201 30 0 3 0 226 255 57357 57386 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000108 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
17986816 17986816 PRJEB7366_P_NODE_13075_length_221_cov_1.505376_g12641_i0 PRJEB7366 13075 221 1.505376 3.32688096 Caenorhabditis elegans 6239 Nematoda Nematoda 110 1.15e-19   NTclustered gi|1734332162|ref|NM_070257.4| 6239 g12641 i0 83.333 25.0588235294118 120 18 54 2 102 220 92 210 Caenorhabditis elegans NIF system FeS cluster assembly NifU N-terminal domain-containing protein (iscu-1), mRNA blastn 5538 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
21811990 21811990 PRJEB7366_P_NODE_10838_length_249_cov_2.504673_g10404_i0 PRJEB7366 10838 249 2.504673 6.23663577 Caenorhabditis briggsae 6238 Nematoda Nematoda 126 1.31e-24   NTclustered gi|2158430054|ref|XM_045243770.1| 6238 g10404 i0 80.982 0.654618473895582 163 28 65 3 78 239 1505 1345 Caenorhabditis briggsae Protein CBG18265 (CBG18265), partial mRNA blastn 163 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
22672427 22672427 PRJEB7366_P_NODE_19938_length_170_cov_2.370370_g19504_i0 PRJEB7366 19938 170 2.37037 4.029629 Metazoa 33208 Nematoda Nematoda 60.2 8.5e-5   NTclustered gi|2158427278|ref|XM_045240655.1| 6238 g19504 i0 97.143 3.32941176470588 35 1 21 0 28 62 1639 1673 Caenorhabditis briggsae Protein CBG12673 (CBG12673), partial mRNA blastn 566 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;