RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB7366" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB7366 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1409817 1409817 PRJEB7366_P_NODE_12442_length_228_cov_1.699482_g12008_i0 PRJEB7366 12442 228 1.699482 3.87481896 Acrasis rosea 43695 Heterolobosea other_Eukaryota 274 3.98e-69   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g12008 i0 88.789 14.969298245614 223 25 98 0 6 228 678 456 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 3413 274 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
9923566 9923566 PRJEB7366_P_NODE_17328_length_185_cov_1.580000_g16894_i0 PRJEB7366 17328 185 1.58 2.923 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 337 3.89e-88   NTclustered gi|89148133|gb|DQ388519.1| 373143 g16894 i0 99.462 41.0810810810811 186 0 100 1 1 185 2246 2431 Heterolobosea sp. BA 16S small subunit ribosomal RNA gene, partial sequence; and His-Cys box homing endonuclease gene, complete cds blastn 7600 337 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. BA
12888809 12888809 PRJEB7366_P_NODE_20231_length_169_cov_1.440299_g19797_i0 PRJEB7366 20231 169 1.440299 2.43410531 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 213 6.12e-51   NTclustered gi|2124407020|ref|XM_044688070.1| 51637 g19797 i0 89.349 78.2603550295858 169 18 100 0 1 169 247 79 Naegleria lovaniensis uncharacterized protein (C9374_012317), partial mRNA blastn 13226 213 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
15437735 15437735 PRJEB7366_P_NODE_18773_length_176_cov_2.248227_g18339_i0 PRJEB7366 18773 176 2.248227 3.95687952 Percolomonas cosmopolitus 63605 Heterolobosea other_Eukaryota 265 1.7499999999999998e-66   NTclustered gi|33089879|gb|AY283748.1| 63605 g18339 i0 93.785 99.4204545454545 177 9 100 2 1 176 181 6 Percolomonas cosmopolitus isolate Gym67_1 actin gene, partial cds blastn 17498 265 1 Eukaryota Discoba   Heterolobosea     Percolomonadidae Percolomonas Percolomonas cosmopolitus
20536151 20536151 PRJEB7366_P_NODE_18717_length_177_cov_1.063380_g18283_i0 PRJEB7366 18717 177 1.06338 1.8821826 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 239 1.07e-58   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g18283 i0 90.96 3 177 16 100 0 1 177 4115 4291 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 531 239 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
23087040 23087040 PRJEB7366_P_NODE_17659_length_183_cov_1.351351_g17225_i0 PRJEB7366 17659 183 1.351351 2.47297233 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 331 1.79e-86   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g17225 i0 99.451 14.0109289617486 182 1 99 0 2 183 3402 3221 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2564 331 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;