RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB7366" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJEB7366 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5237788 5237788 PRJEB7366_P_NODE_15125_length_201_cov_1.969880_g14691_i0 PRJEB7366 15125 201 1.96988 3.9594588 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 135 1.6900000000000003e-27   NTclustered gi|2787690126|ref|XM_067335354.1| 715481 g14691 i0 80.556 0.895522388059702 180 31 89 4 5 182 1177 1000 Trypanosoma melophagium Cys/Met metabolism (LSM04_005190), partial mRNA blastn 180 135 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
9923580 9923580 PRJEB7366_P_NODE_9488_length_272_cov_1.489451_g9054_i0 PRJEB7366 9488 272 1.489451 4.05130672 root 1 Root_unresolved Root_unresolved 60.2 1.49e-4   NTclustered gi|14485025|gb|AF353632.1|AF353632 5702 g9054 i0 100 14.1286764705882 32 0 12 0 59 90 278 247 Trypanosoma brucei brucei surface protein EP3-3 procyclin precursor (EP3-3) gene, EP3-3-GPEET/PAG3-2 allele, complete cds blastn 3843 60.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
10338293 10338293 PRJEB7366_P_NODE_19389_length_173_cov_1.739130_g18955_i0 PRJEB7366 19389 173 1.73913 3.0086949 Herpetomonas muscarum 5718 Euglenozoa other_Eukaryota 154 3.87e-33   NTclustered gi|529495812|gb|KC503374.1| 5718 g18955 i0 82.759 23.0057803468208 174 28 100 2 1 173 976 1148 Herpetomonas muscarum clone H1_3.3.1.1 adenosylhomocysteinase gene, complete cds blastn 3980 154 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Herpetomonas Herpetomonas muscarum
12888849 12888849 PRJEB7366_P_NODE_7051_length_328_cov_7.296928_g6617_i0 PRJEB7366 7051 328 7.296928 23.93392384 Trypanosoma rangeli 5698 Euglenozoa other_Eukaryota 222 2.22e-53   NTclustered gi|24286542|gb|AY147904.1| 5698 g6617 i0 83.761 7.22560975609756 234 38 71 0 61 294 46 279 Trypanosoma rangeli kinetoplastid membrane protein 11 gene, complete cds blastn 2370 222 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
15437767 15437767 PRJEB7366_P_NODE_453_length_1366_cov_6.954921_g320_i0 PRJEB7366 453 1366 6.954921 95.00422086 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 1644 0   NTclustered gi|226347408|gb|FJ807243.1| 56466 g320 i0 88.681 96.3674963396779 1334 151 98 0 1 1334 1334 1 Peranema trichophorum strain CCAP 1260/1 B elongation factor 1 alpha mRNA, partial cds blastn 131638 1644 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
16711965 16711965 PRJEB7366_P_NODE_6114_length_358_cov_2.058824_g5681_i0 PRJEB7366 6114 358 2.058824 7.37058992 Euglena agilis 96764 Euglenozoa other_Eukaryota 243 1.8700000000000001e-59   NTclustered gi|1020992084|gb|KT984750.1| 96764 g5681 i0 80.769 56.8659217877095 312 58 87 2 47 357 48 358 Euglena agilis strain ACOI 2970 clone B heat shock protein 90 (hsp90) mRNA, complete cds blastn 20358 243 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena agilis
21812036 21812036 PRJEB7366_P_NODE_2878_length_562_cov_2.020873_g2475_i0 PRJEB7366 2878 562 2.020873 11.35730626 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 617 4.3499999999999997e-172   NTclustered gi|118738152|gb|EF114757.1| 56466 g2475 i0 86.583 0.994661921708185 559 75 99 0 1 559 764 1322 Peranema trichophorum pyruvate:NADP+ oxidoreductase (pno) mRNA, partial cds blastn 559 617 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
23087088 23087088 PRJEB7366_P_NODE_859_length_1055_cov_3.276471_g637_i0 PRJEB7366 859 1055 3.276471 34.56676905 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 769 0   NTclustered gi|427188201|dbj|AB757706.1| 56466 g637 i0 84.439 3.07109004739337 784 118 74 3 14 795 788 7 Peranema trichophorum rpl3 mRNA for 60S ribosomal protein L3, partial cds, strain: K-01 blastn 3240 769 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;