RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB7366" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJEB7366 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2270639 2270639 PRJEB7366_P_NODE_14662_length_205_cov_3.029412_g14228_i0 PRJEB7366 14662 205 3.029412 6.2102946 Trebouxia 13786 Plants Plants 374 3.3599999999999997e-99   NTclustered gi|162134340|gb|EU123979.1| 160068 g14228 i0 99.512 132.346341463415 205 1 100 0 1 205 1220 1424 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 27131 374 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
12888783 12888783 PRJEB7366_P_NODE_10691_length_251_cov_4.060185_g10257_i0 PRJEB7366 10691 251 4.060185 10.19106435 Trebouxia sp. Wei 22-c 283661 Plants Plants 464 2.47e-126   NTclustered gi|49781197|gb|AY648107.1| 283661 g10257 i0 100 100.824701195219 251 0 100 0 1 251 1667 1417 Trebouxia sp. Wei 22-c 26S ribosomal RNA gene, partial sequence blastn 25307 464 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. Wei 22-c
13748949 13748949 PRJEB7366_P_NODE_21791_length_162_cov_1.133858_g21357_i0 PRJEB7366 21791 162 1.133858 1.83684996 Trebouxia 13786 Plants Plants 300 4.36e-77   NTclustered gi|162134382|gb|EU123993.1| 160068 g21357 i0 100 105.549382716049 162 0 100 0 1 162 4436 4597 Trebouxia aggregata strain SAG 219-1d small-subunit ribosomal RNA (rrs), 5S ribosomal RNA (rrf), and tRNA-Gly (trnG(gcc)) genes, complete sequence; chloroplast blastn 17099 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
16711970 16711970 PRJEB7366_P_NODE_6914_length_332_cov_10.508418_g6480_i0 PRJEB7366 6914 332 10.508418 34.88794776 Trebouxia lynnae 1825957 Plants Plants 592 1.49e-164   NTclustered gi|1016111943|gb|KU716051.1| 1825957 g6480 i0 98.795 16.2831325301205 332 4 100 0 1 332 6992 6661 Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence blastn 5406 592 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
17986834 17986834 PRJEB7366_P_NODE_18575_length_177_cov_3.323944_g18141_i0 PRJEB7366 18575 177 3.323944 5.88338088 uncultured Trebouxia photobiont 285713 Plants Plants 311 2.23e-80   NTclustered gi|1273623725|gb|KY033354.1| 285713 g18141 i0 98.305 82.6497175141243 177 3 100 0 1 177 6626 6802 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14629 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;