RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB73599" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB73599 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1409791 1409791 PRJEB73599_P_NODE_7262_length_211_cov_2.873626_g6975_i0 PRJEB73599 7262 211 2.873626 6.06335086 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 106 1.4e-18   NTclustered gi|463171|gb|L23799.1|PMHRRSS 108607 g6975 i0 80.69 0.687203791469194 145 20 66 7 72 211 1193 1052 Phreatamoeba balamuthi ribosomal RNA small subunit gene blastn 145 106 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
11613714 11613714 PRJEB73599_P_NODE_8050_length_191_cov_1.641975_g7763_i0 PRJEB73599 8050 191 1.641975 3.13617225 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 80.5 7.54e-11   NTclustered gi|19911165|dbj|AB066365.1| 108607 g7763 i0 86.667 0.392670157068063 75 7 39 2 111 185 72 1 Mastigamoeba balamuthi gene for LSU rRNA, partial sequence, clone:MbR3 blastn 75 80.5 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;