RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB73599" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB73599 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7787539 7787539 PRJEB73599_P_NODE_3867_length_353_cov_22.169753_g3581_i0 PRJEB73599 3867 353 22.169753 78.25922809 uncultured Rhizophydiales 687209 Fungi Fungi 555 2.0899999999999994e-153   NTclustered gi|2532153729|gb|OR239083.1| 687209 g3581 i0 95.17 100.220963172805 352 15 99 2 3 353 368 18 Uncultured Rhizophydiales clone Chytrid_sample_117-121 large subunit ribosomal RNA gene, partial sequence blastn 35378 555 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
9062488 9062488 PRJEB73599_P_NODE_9228_length_167_cov_1.594203_g8941_i0 PRJEB73599 9228 167 1.594203 2.66231901 uncultured Chytridiomycota 175247 Fungi Fungi 279 5.9e-71   NTclustered gi|261871809|gb|GU055563.1| 175247 g8941 i0 97.006 81.5568862275449 167 4 100 1 1 167 1147 1312 Uncultured Chytridiomycota clone NG_N_C01 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13620 279 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
12888755 12888755 PRJEB73599_P_NODE_6611_length_230_cov_5.776119_g6324_i0 PRJEB73599 6611 230 5.776119 13.2850737 Rhizophydiales sp. 2011922 Fungi Fungi 303 5.13e-78   NTclustered gi|2468790916|gb|OQ702893.1| 2011922 g6324 i0 90.87 83.8260869565217 230 16 99 5 4 230 3091 2864 Rhizophydiales sp. isolate PSC176 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19280 303 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     Rhizophydiales sp.
15437672 15437672 PRJEB73599_P_NODE_6053_length_249_cov_2.959091_g5766_i0 PRJEB73599 6053 249 2.959091 7.36813659 Chytriomycetaceae sp. 2012318 Fungi Fungi 52.8 0.023   NTclustered gi|2468791082|gb|OQ702938.1| 2012318 g5766 i0 100 0.112449799196787 28 0 11 0 193 220 4562 4589 Chytriomycetaceae sp. isolate PSC286 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae   Chytriomycetaceae sp.
16711851 16711851 PRJEB73599_P_NODE_4854_length_298_cov_4.345725_g4567_i0 PRJEB73599 4854 298 4.345725 12.9502605 Spizellomyces punctatus 109760 Fungi Fungi 207 5.59e-49   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g4567 i0 91.503 36.8288590604027 153 10 51 2 146 297 4085 3935 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 10975 207 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
18847212 18847212 PRJEB73599_P_NODE_6355_length_239_cov_2.157143_g6068_i0 PRJEB73599 6355 239 2.157143 5.15557177 Fungi 4751 Fungi Fungi 313 8.93e-81   NTclustered gi|261871809|gb|GU055563.1| 175247 g6068 i0 88.285 12.2928870292887 239 21 100 1 1 239 1468 1699 Uncultured Chytridiomycota clone NG_N_C01 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2938 313 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
21811979 21811979 PRJEB73599_P_NODE_9258_length_166_cov_2.569343_g8971_i0 PRJEB73599 9258 166 2.569343 4.26510938 Gromochytrium mamkaevae 1486924 Fungi Fungi 67.6 4.96e-7   NTclustered gi|612507318|gb|KF586842.1| 1486924 g8971 i0 86.885 0.367469879518072 61 6 36 1 3 61 6189 6129 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 61 67.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
23086978 23086978 PRJEB73599_P_NODE_5039_length_289_cov_12.434615_g4752_i0 PRJEB73599 5039 289 12.434615 35.93603735 Spizellomyces punctatus 109760 Fungi Fungi 209 1.4999999999999998e-49   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g4752 i0 94.203 33.076124567474 138 7 47 1 2 138 3935 4072 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 9559 209 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;