RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB673" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB673 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2685017 2685017 PRJEB673_P_NODE_5863_length_363_cov_11.865854_g5514_i0 PRJEB673 5863 363 11.865854 43.07305002 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 204 8.98e-48   NTclustered gi|470521486|ref|XM_004353672.1| 1257118 g5514 i0 82.479 64.8732782369146 234 39 64 2 92 324 99 331 Acanthamoeba castellanii str. Neff Histone H4, putative (ACA1_376700), partial mRNA blastn 23549 204 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17986513 17986513 PRJEB673_P_NODE_5675_length_372_cov_1.379822_g5326_i0 PRJEB673 5675 372 1.379822 5.13293784 Ripella decalvata 2047822 Discosea other_Eukaryota 593 4.689999999999999e-165   NTclustered gi|1269228392|gb|MF683517.1| 2047822 g5326 i0 95.479 93.0940860215054 376 10 100 7 1 372 1577 1205 Ripella decalvata clone 23.3.1 18S ribosomal RNA gene, partial sequence blastn 34631 593 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
20121793 20121793 PRJEB673_P_NODE_8936_length_223_cov_1.377660_g8587_i0 PRJEB673 8936 223 1.37766 3.0721818 Vannella 95228 Discosea other_Eukaryota 385 1.72e-102   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g8587 i0 97.758 87 223 5 100 0 1 223 362 140 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 19401 385 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;