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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB673" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB673 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
995299 995299 PRJEB673_P_NODE_13001_length_150_cov_1.391304_g12652_i0 PRJEB673 13001 150 1.391304 2.086956 Vulpes 9625 Chordata Chordata 78.7 2.02e-10   NTclustered gi|1435549343|ref|XM_025991200.1| 9627 g12652 i0 80.769 12.6666666666667 104 16 68 4 32 133 222 323 PREDICTED: Vulpes vulpes 60S ribosomal protein L30-like (LOC112914198), mRNA blastn 1900 78.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Vulpes Vulpes vulpes
2684946 2684946 PRJEB673_P_NODE_10323_length_176_cov_1.666667_g9974_i0 PRJEB673 10323 176 1.666667 2.93333392 Lethenteron reissneri 7753 Chordata Chordata 178 2.35e-40   NTclustered gi|2635851083|ref|XM_061560508.1| 7753 g9974 i0 86.792 70.2727272727273 159 21 90 0 1 159 252 410 PREDICTED: Lethenteron reissneri ribosomal protein S9 (RPS9), mRNA blastn 12368 178 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
5237423 5237423 PRJEB673_P_NODE_11925_length_157_cov_1.811475_g11576_i0 PRJEB673 11925 157 1.811475 2.84401575 Mus musculus 10090 Chordata Chordata 52.8 0.013   NTclustered gi|1039744595|ref|XR_001780889.1| 10090 g11576 i0 100 0.356687898089172 28 0 18 0 112 139 355 328 PREDICTED: Mus musculus predicted gene, 30127 (Gm30127), ncRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
5237510 5237510 PRJEB673_P_NODE_9685_length_190_cov_1.290323_g9336_i0 PRJEB673 9685 190 1.290323 2.4516137 Xenopus laevis 8355 Chordata Chordata 52.8 0.016   NTclustered gi|2038222965|ref|XM_041565031.1| 8355 g9336 i0 100 2.50526315789474 28 0 15 0 148 175 5263 5290 PREDICTED: Xenopus laevis myelin transcription factor 1-like protein (LOC108718228), transcript variant X5, mRNA blastn 476 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
8648449 8648449 PRJEB673_P_NODE_7847_length_305_cov_1.974074_g7498_i0 PRJEB673 7847 305 1.974074 6.0209257 Lacertidae 8522 Chordata Chordata 52.8 0.028   NTclustered gi|1622176963|ref|XM_028710289.1| 64176 g7498 i0 100 1.00983606557377 28 0 9 0 190 217 201 174 PREDICTED: Podarcis muralis beta-keratin-related protein-like (LOC114586635), mRNA blastn 308 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis muralis
10337906 10337906 PRJEB673_P_NODE_10789_length_169_cov_1.029851_g10440_i0 PRJEB673 10789 169 1.029851 1.74044819 Chrysemys picta 8479 Chordata Chordata 108 2.97e-19   NTclustered gi|2739604710|ref|XM_065551444.1| 8478 g10440 i0 78.981 1.09467455621302 157 33 93 0 11 167 442 286 PREDICTED: Chrysemys picta bellii ADP ribosylation factor 5 (ARF5), mRNA blastn 185 108 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Chrysemys Chrysemys picta
14163274 14163274 PRJEB673_P_NODE_12972_length_150_cov_1.434783_g12623_i0 PRJEB673 12972 150 1.434783 2.1521745 Ranitomeya imitator 111125 Chordata Chordata 89.8 9.31e-14   NTclustered gi|2851959547|ref|XM_069731569.1| 111125 g12623 i0 88 2.98666666666667 75 9 50 0 76 150 1789 1715 PREDICTED: Ranitomeya imitator V-type proton ATPase subunit d 2 (LOC138642939), mRNA blastn 448 89.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
17986456 17986456 PRJEB673_P_NODE_12235_length_155_cov_1.333333_g11886_i0 PRJEB673 12235 155 1.333333 2.06666615 Spinus spinus 160760 Chordata Chordata 52.8 0.013   NTclustered gi|2917663466|emb|OZ228753.1| 160760 g11886 i0 100 0.361290322580645 28 0 18 0 38 65 37205149 37205122 Spinus spinus genome assembly, chromosome: 5 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
23086656 23086656 PRJEB673_P_NODE_11439_length_161_cov_1.587302_g11090_i0 PRJEB673 11439 161 1.587302 2.55555622 Erinaceus europaeus 9365 Chordata Chordata 56.5 0.001   NTclustered gi|2591557184|ref|XM_060201429.1| 9365 g11090 i0 94.595 0.919254658385093 37 1 22 1 72 107 2229 2193 PREDICTED: Erinaceus europaeus kirre like nephrin family adhesion molecule 1 (KIRREL1), transcript variant X3, mRNA blastn 148 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Erinaceidae Erinaceus Erinaceus europaeus
23947823 23947823 PRJEB673_P_NODE_6739_length_334_cov_2.311037_g6390_i0 PRJEB673 6739 334 2.311037 7.71886358 Rodentia 9989 Chordata Chordata 54.7 0.009   NTclustered gi|2599575189|ref|XM_060385522.1| 10047 g6390 i0 100 0.955089820359281 29 0 9 0 89 117 613 585 PREDICTED: Meriones unguiculatus phospholipid scramblase 4 (Plscr4), transcript variant X3, mRNA blastn 319 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Meriones Meriones unguiculatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;