RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB673" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB673 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
134925 134925 PRJEB673_P_NODE_3841_length_506_cov_2.033970_g3511_i0 PRJEB673 3841 506 2.03397 10.2918882 Monoraphidium neglectum 145388 Plants Plants 169 4.71e-37   NTclustered gi|926787363|ref|XM_014046702.1| 145388 g3511 i0 83.889 4.91106719367589 180 25 35 4 58 235 870 693 Monoraphidium neglectum Calreticulin Flags: Precursor mRNA blastn 2485 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
8648447 8648447 PRJEB673_P_NODE_6707_length_335_cov_1.636667_g6358_i0 PRJEB673 6707 335 1.636667 5.48283445 root 1 Root_unresolved Root_unresolved 52.8 0.032   NTclustered gi|2863412631|gb|CP145450.1| 1461544 g6358 i0 100 0.250746268656716 28 0 8 0 252 279 747765 747738 Chloropicon roscoffensis strain CCMP1998 chromosome 10 blastn 84 52.8 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon roscoffensis
9923348 9923348 PRJEB673_P_NODE_12148_length_156_cov_0.983471_g11799_i0 PRJEB673 12148 156 0.983471 1.53421476 root 1 Root_unresolved Root_unresolved 147 5.73e-31   NTclustered gi|255087347|ref|XM_002505551.1| 296587 g11799 i0 85.714 76.6923076923077 140 18 89 2 18 156 608 470 Micromonas commoda predicted protein partial mRNA blastn 11964 147 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
10338015 10338015 PRJEB673_P_NODE_9769_length_187_cov_3.355263_g9420_i0 PRJEB673 9769 187 3.355263 6.27434181 Chlamydomonas reinhardtii 3055 Plants Plants 58.4 3.44e-4   NTclustered gi|2082237163|ref|XM_043058766.1| 3055 g9420 i0 100 0.561497326203209 31 0 17 0 146 176 198 228 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g039250v5), mRNA blastn 105 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14163276 14163276 PRJEB673_P_NODE_13052_length_150_cov_1.043478_g12703_i0 PRJEB673 13052 150 1.043478 1.565217 Chlorella variabilis 554065 Plants Plants 122 9.18e-24   NTclustered gi|552813385|ref|XM_005843877.1| 554065 g12703 i0 82.857 2.53333333333333 140 21 93 2 1 140 1233 1369 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59785) mRNA, complete cds blastn 380 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
17573194 17573194 PRJEB673_P_NODE_12314_length_154_cov_2.210084_g11965_i0 PRJEB673 12314 154 2.210084 3.40352936 Eukaryota 2759 Plants Plants 110 7.39e-20   NTclustered gi|760450068|ref|XM_011403801.1| 3075 g11965 i0 90.361 55.5974025974026 83 8 54 0 1 83 322 404 Auxenochlorella protothecoides Peptidyl-prolyl cis-trans isomerase CYP18-4 partial mRNA blastn 8562 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
17986491 17986491 PRJEB673_P_NODE_4315_length_462_cov_1.498829_g3972_i0 PRJEB673 4315 462 1.498829 6.92458998 Micromonas commoda 296587 Plants Plants 169 4.27e-37   NTclustered gi|255074984|ref|XM_002501121.1| 296587 g3972 i0 80.169 1.504329004329 237 37 50 9 36 267 560 329 Micromonas commoda mitochondrial carrier family partial mRNA blastn 695 169 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
24360738 24360738 PRJEB673_P_NODE_6120_length_354_cov_1.645768_g5771_i0 PRJEB673 6120 354 1.645768 5.82601872 Monoraphidium neglectum 145388 Plants Plants 178 5.289999999999999e-40   NTclustered gi|926781811|ref|XM_014043926.1| 145388 g5771 i0 89.855 44.0988700564972 138 14 39 0 216 353 225 88 Monoraphidium neglectum peptidyl-prolyl cis-trans isomerase, cyclophilin-type mRNA blastn 15611 178 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;