RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB673" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJEB673 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2685017 2685017 PRJEB673_P_NODE_5863_length_363_cov_11.865854_g5514_i0 PRJEB673 5863 363 11.865854 43.07305002 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 204 8.98e-48   NTclustered gi|470521486|ref|XM_004353672.1| 1257118 g5514 i0 82.479 64.8732782369146 234 39 64 2 92 324 99 331 Acanthamoeba castellanii str. Neff Histone H4, putative (ACA1_376700), partial mRNA blastn 23549 204 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7787322 7787322 PRJEB673_P_NODE_767_length_1039_cov_3.438247_g599_i0 PRJEB673 767 1039 3.438247 35.72338633 Heterostelium album 2086695 Evosea other_Eukaryota 1125 0   NTclustered gi|1160564476|ref|XM_020583030.1| 670386 g599 i0 86.667 97.6313763233879 1020 130 98 6 23 1039 1185 169 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 101439 1125 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
9062123 9062123 PRJEB673_P_NODE_10048_length_182_cov_1.231293_g9699_i0 PRJEB673 10048 182 1.231293 2.24095326 Heterostelium album 2086695 Evosea other_Eukaryota 113 7e-21   NTclustered gi|1160557226|ref|XM_020574438.1| 670386 g9699 i0 80.986 2.04395604395604 142 27 78 0 2 143 106 247 Polysphondylium pallidum PN500 annexin VII (nxnA), partial mRNA blastn 372 113 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
17986513 17986513 PRJEB673_P_NODE_5675_length_372_cov_1.379822_g5326_i0 PRJEB673 5675 372 1.379822 5.13293784 Ripella decalvata 2047822 Discosea other_Eukaryota 593 4.689999999999999e-165   NTclustered gi|1269228392|gb|MF683517.1| 2047822 g5326 i0 95.479 93.0940860215054 376 10 100 7 1 372 1577 1205 Ripella decalvata clone 23.3.1 18S ribosomal RNA gene, partial sequence blastn 34631 593 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
20121793 20121793 PRJEB673_P_NODE_8936_length_223_cov_1.377660_g8587_i0 PRJEB673 8936 223 1.37766 3.0721818 Vannella 95228 Discosea other_Eukaryota 385 1.72e-102   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g8587 i0 97.758 87 223 5 100 0 1 223 362 140 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 19401 385 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
23086776 23086776 PRJEB673_P_NODE_999_length_929_cov_2.130872_g808_i0 PRJEB673 999 929 2.130872 19.79580088 Stemonitopsis subcaespitosa 1048528 Evosea other_Eukaryota 878 0   NTclustered gi|426281760|gb|JX681133.1| 1048528 g808 i0 84.943 88.8815931108719 870 128 93 1 58 924 6 875 Stemonitopsis subcaespitosa actin gene, partial cds blastn 82571 878 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitopsis Stemonitopsis subcaespitosa
23947821 23947821 PRJEB673_P_NODE_5359_length_385_cov_2.320000_g5010_i0 PRJEB673 5359 385 2.32 8.932 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 250 1.21e-61   NTclustered gi|471205339|ref|XM_004259391.1| 370355 g5010 i0 78.59 99.8363636363636 383 78 99 4 5 385 998 618 Entamoeba invadens IP1 actin, putative (EIN_370100) mRNA, complete cds blastn 38437 252 0.992063492063492 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;