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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB66218" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB66218 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3959196 3959196 PRJEB66218_P_NODE_2944_length_2722_cov_37.396467_g2468_i0 PRJEB66218 2944 2722 37.396467 1017.93183174 Cephalobus cubaensis 114851 Nematoda Nematoda 331 3.24e-85   NTclustered gi|2678074852|gb|PP358784.1| 114851 g2468 i0 78.625 16.3618662747979 538 88 19 19 1141 1662 1884 1358 Cephalobus cubaensis isolate B3311/M641 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 44537 331 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Cephalobus Cephalobus cubaensis
6511097 6511097 PRJEB66218_P_NODE_249626_length_177_cov_6.491379_g247194_i0 PRJEB66218 249626 177 6.491379 11.48974083 Bunonema sp. VS-2014 1538689 Nematoda Nematoda 78.7 2.47e-10   NTclustered gi|675118816|gb|KJ877287.1| 1538689 g247194 i0 91.228 10.1186440677966 57 5 32 0 77 133 1263 1319 Bunonema sp. VS-2014 strain RS9014 28S ribosomal RNA gene, partial sequence blastn 1791 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Bunonematidae Bunonema Bunonema sp. VS-2014
9060790 9060790 PRJEB66218_P_NODE_46068_length_505_cov_2.792793_g43652_i0 PRJEB66218 46068 505 2.792793 14.10360465 Strongyloides ratti 34506 Nematoda Nematoda 337 1.22e-87   NTclustered gi|1376154049|ref|XM_024646386.1| 34506 g43652 i0 80.31 63.2851485148515 452 84 89 5 43 490 1438 988 Strongyloides ratti V-type proton ATPase subunit B, kidney (SRAE_X000121000), partial mRNA blastn 31959 337 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14160879 14160879 PRJEB66218_P_NODE_216152_length_207_cov_0.890411_g213722_i0 PRJEB66218 216152 207 0.890411 1.84315077 Strongyloides ratti 34506 Nematoda Nematoda 76.8 1.07e-9   NTclustered gi|1376135875|ref|XM_024647987.1| 34506 g213722 i0 80 0.507246376811594 105 20 51 1 2 106 223 326 Strongyloides ratti Ribosomal protein L26/L24P, eukaryotic/archaeal family and Translation protein SH3-like domain and Ribosomal protein L2 domain 2-containing protein (SRAE_1000107700), partial mRNA blastn 105 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
16707772 16707772 PRJEB66218_P_NODE_135054_length_256_cov_1.682051_g132625_i0 PRJEB66218 135054 256 1.682051 4.30605056 Plectus aquatilis 70222 Nematoda Nematoda 300 7.53e-77   NTclustered gi|148614850|gb|EF417147.1| 70222 g132625 i0 86.822 11.5078125 258 30 99 2 2 256 574 318 Plectus aquatilis large subunit ribosomal RNA gene, partial sequence blastn 2946 300 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus aquatilis
16708941 16708941 PRJEB66218_P_NODE_201394_length_210_cov_1.308725_g198964_i0 PRJEB66218 201394 210 1.308725 2.7483225 Necator americanus 51031 Nematoda Nematoda 117 6.44e-22   NTclustered gi|2707547990|ref|XM_064180592.1| 51031 g198964 i0 95.833 2.99047619047619 72 3 34 0 102 173 272 201 Necator americanus uncharacterized protein (RB195_007128), partial mRNA blastn 628 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
16709032 16709032 PRJEB66218_P_NODE_207334_length_209_cov_0.878378_g204904_i0 PRJEB66218 207334 209 0.878378 1.83581002 Strongyloides papillosus 174720 Nematoda Nematoda 180 8.06e-41   NTclustered gi|690018524|emb|LM525762.1| 174720 g204904 i0 84.239 19.0095693779904 184 29 88 0 6 189 22898 22715 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000152 blastn 3973 180 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
16709389 16709389 PRJEB66218_P_NODE_231874_length_204_cov_0.909091_g229444_i0 PRJEB66218 231874 204 0.909091 1.85454564 Strongyloides papillosus 174720 Nematoda Nematoda 167 6.089999999999999e-37   NTclustered gi|687022666|emb|LM525580.1| 174720 g229444 i0 82.723 90.9607843137255 191 29 93 4 12 200 237326 237138 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000007 blastn 18556 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
19260112 19260112 PRJEB66218_P_NODE_86036_length_337_cov_1.648551_g83609_i0 PRJEB66218 86036 337 1.648551 5.55561687 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 6.84e-4   NTclustered gi|687022647|emb|LM525561.1| 174720 g83609 i0 100 9.13946587537092 31 0 9 0 305 335 75339 75309 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000006 blastn 3080 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
22671102 22671102 PRJEB66218_P_NODE_132238_length_259_cov_1.964646_g129809_i0 PRJEB66218 132238 259 1.964646 5.08843314 root 1 Root_unresolved Root_unresolved 324 4.53e-84   NTclustered gi|18147016|dbj|AB047763.1| 6304 g129809 i0 89.189 57.2393822393822 259 28 100 0 1 259 1093 835 Meloidogyne arenaria DNA, polymorphic marker for virulence, isolate:MAYG-VI blastn 14825 324 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne arenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;