RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB66218" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB66218 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1408889 1408889 PRJEB66218_P_NODE_77482_length_360_cov_3.133779_g75056_i0 PRJEB66218 77482 360 3.133779 11.2816044 Heterostelium pallidum 13642 Evosea other_Eukaryota 52.8 0.034   NTclustered gi|60117108|ref|NC_006862.1| 13642 g75056 i0 100 0.155555555555556 28 0 8 0 314 341 2169 2196 Polysphondylium pallidum mitochondrion, complete genome blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
9059054 9059054 PRJEB66218_P_NODE_173408_length_225_cov_1.585366_g170978_i0 PRJEB66218 173408 225 1.585366 3.5670735 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|66813365|ref|XM_635770.1| 352472 g170978 i0 100 0.826666666666667 30 0 13 0 25 54 1106 1135 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0281317) mRNA, complete cds blastn 186 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
12884412 12884412 PRJEB66218_P_NODE_123011_length_271_cov_0.947619_g120582_i0 PRJEB66218 123011 271 0.947619 2.56804749 Physarum polycephalum 5791 Evosea other_Eukaryota 246 1.06e-60   NTclustered gi|119552593|gb|EF140724.1| 5791 g120582 i0 83.984 46.9225092250922 256 41 94 0 3 258 139 394 Physarum polycephalum 14-3-3-like protein mRNA, complete cds blastn 12716 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
15437057 15437057 PRJEB66218_P_NODE_87293_length_334_cov_1.549451_g84866_i0 PRJEB66218 87293 334 1.549451 5.17516634 Echinostelium arboreum 318077 Evosea other_Eukaryota 368 2.7500000000000003e-97   NTclustered gi|61661536|gb|AY842032.1| 318077 g84866 i0 88.525 82.0778443113772 305 33 91 2 1 304 492 795 Echinostelium arboreum strain ATCC 66095 elongation factor 1F-alpha (EF1A) gene, partial cds blastn 27414 368 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium arboreum
17984516 17984516 PRJEB66218_P_NODE_247655_length_190_cov_3.023256_g245223_i0 PRJEB66218 247655 190 3.023256 5.7441864 uncultured Soliformovum 2510342 Evosea other_Eukaryota 303 4.08e-78   NTclustered gi|1564356923|gb|MK443523.1| 2510342 g245223 i0 95.789 1.41052631578947 190 5 99 2 2 190 244 57 Uncultured Soliformovum clone OTUA345 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 268 303 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae   uncultured Soliformovum
20531792 20531792 PRJEB66218_P_NODE_124737_length_268_cov_2.502415_g122308_i0 PRJEB66218 124737 268 2.502415 6.7064722 Acytostelium subglobosum 361139 Evosea other_Eukaryota 147 1.09e-30   NTclustered gi|831768525|ref|XM_012896976.1| 1410327 g122308 i0 80.102 1.47388059701493 196 39 73 0 2 197 726 921 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 395 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;