RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB66218" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB66218 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10337532 10337532 PRJEB66218_P_NODE_84929_length_340_cov_1.394265_g82502_i0 PRJEB66218 84929 340 1.394265 4.740501 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 368 2.81e-97   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g82502 i0 86.176 99.4941176470588 340 47 100 0 1 340 1294979 1295318 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 33828 368 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
14161456 14161456 PRJEB66218_P_NODE_27912_length_704_cov_1.237947_g25633_i0 PRJEB66218 27912 704 1.237947 8.71514688 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 643 9.119999999999999e-180   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g25633 i0 83.24 72.4744318181818 716 105 100 8 1 704 776510 775798 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 51022 643 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
18846231 18846231 PRJEB66218_P_NODE_207155_length_209_cov_0.878378_g204725_i0 PRJEB66218 207155 209 0.878378 1.83581002 Bacteria 2 Bacteria Bacteria 387 4.42e-103   NTclustered gi|402243566|gb|JX294352.1| 1226338 g204725 i0 100 101.454545454545 209 0 100 0 1 209 225 17 GN02 bacterium oral taxon 871 clone 4L02 16S ribosomal RNA gene, partial sequence blastn 21204 387 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Gracilibacteria bacterium oral taxon 871
20535098 20535098 PRJEB66218_P_NODE_70857_length_381_cov_2.853125_g68433_i0 PRJEB66218 70857 381 2.853125 10.87040625 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 172 2.67e-38   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g68433 i0 83.42 16.1522309711286 193 24 50 8 1 189 1250890 1250702 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 6154 172 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;