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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB66218" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 10 ✖

bioproject 1

  • PRJEB66218 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7784469 7784469 PRJEB66218_P_NODE_193667_length_213_cov_1.282895_g191237_i0 PRJEB66218 193667 213 1.282895 2.73256635 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 224 3.7499999999999997e-54   NTclustered gi|297180392|gb|GU474842.1| 710820 g191237 i0 87.565 142.431924882629 193 24 91 0 21 213 12837 12645 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 30338 224 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
9061621 9061621 PRJEB66218_P_NODE_79668_length_354_cov_1.873720_g77242_i0 PRJEB66218 79668 354 1.87372 6.6329688000000004 Bradymonas sediminis 1548548 Bacteria Bacteria 52.8 0.033   NTclustered gi|1406952946|gb|CP030032.1| 1548548 g77242 i0 100 0.0790960451977401 28 0 8 0 301 328 216114 216087 Bradymonas sediminis strain FA350 chromosome, complete genome blastn 28 52.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
11198523 11198523 PRJEB66218_P_NODE_88229_length_332_cov_0.848708_g85802_i0 PRJEB66218 88229 332 0.848708 2.81771056 Haliangium 162027 Bacteria Bacteria 69.4 3.11e-7   NTclustered gi|2874253659|emb|OY969087.1| 34034 g85802 i0 90.385 0.710843373493976 52 5 16 0 166 217 3128904 3128853 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 236 69.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12884056 12884056 PRJEB66218_P_NODE_107251_length_294_cov_1.107296_g104822_i0 PRJEB66218 107251 294 1.107296 3.25545024 uncultured delta proteobacterium 34034 Bacteria Bacteria 259 1.5e-64   NTclustered gi|2874253999|emb|OY970324.1| 34034 g104822 i0 87.611 120.833333333333 226 24 76 4 54 277 82673 82450 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 35525 259 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
13747714 13747714 PRJEB66218_P_NODE_153511_length_239_cov_1.325843_g151082_i0 PRJEB66218 153511 239 1.325843 3.16876477 Thermodesulfobacteriota 200940 Bacteria Bacteria 425 1.1e-114   NTclustered gi|38373449|gb|AY455845.1| 34034 g151082 i0 98.745 99.5020920502092 239 3 100 0 1 239 249 11 Uncultured delta proteobacterium clone AL1 16S ribosomal RNA gene, partial sequence blastn 23781 425 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
14162969 14162969 PRJEB66218_P_NODE_86912_length_335_cov_1.594891_g84485_i0 PRJEB66218 86912 335 1.594891 5.34288485 uncultured delta proteobacterium DeepAnt-1F12 357894 Bacteria Bacteria 448 3.4499999999999995e-121   NTclustered gi|82617822|gb|DQ267495.1| 357894 g84485 i0 91.9 207.728358208955 321 24 96 2 1 320 3887 4206 Uncultured delta proteobacterium DeepAnt-1F12 fosmid, complete sequence blastn 69589 448 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium DeepAnt-1F12
21396437 21396437 PRJEB66218_P_NODE_156797_length_236_cov_2.851429_g154367_i0 PRJEB66218 156797 236 2.851429 6.72937244 Bacteria 2 Bacteria Bacteria 436 4.999999999999999e-118   NTclustered gi|383932333|gb|JN981954.1| 34034 g154367 i0 100 95.3262711864407 236 0 100 0 1 236 242 7 Uncultured delta proteobacterium clone OTU-20_BFBA 16S ribosomal RNA gene, partial sequence blastn 22497 436 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24357718 24357718 PRJEB66218_P_NODE_179200_length_221_cov_2.062500_g176770_i0 PRJEB66218 179200 221 2.0625 4.558125 uncultured delta proteobacterium 34034 Bacteria Bacteria 403 4.69e-108   NTclustered gi|451917560|gb|KC451424.1| 34034 g176770 i0 99.548 98.9004524886878 221 1 100 0 1 221 3 223 Uncultured delta proteobacterium clone RLBp5442 16S ribosomal RNA gene, partial sequence blastn 21857 403 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24358078 24358078 PRJEB66218_P_NODE_200920_length_210_cov_1.677852_g198490_i0 PRJEB66218 200920 210 1.677852 3.5234892 uncultured delta proteobacterium 34034 Bacteria Bacteria 278 2.79e-70   NTclustered gi|374854163|dbj|AP011765.1| 34034 g198490 i0 90.476 136.290476190476 210 20 100 0 1 210 13217 13008 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 28621 278 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
25220412 25220412 PRJEB66218_P_NODE_156160_length_237_cov_1.397727_g153731_i0 PRJEB66218 156160 237 1.397727 3.31261299 Myxococcota 2818505 Bacteria Bacteria 377 3.09e-100   NTclustered gi|60266418|gb|AY921872.1| 34034 g153731 i0 95.397 100.405063291139 239 7 100 4 1 237 783 547 Uncultured delta proteobacterium clone AKYH836 16S ribosomal RNA gene, partial sequence blastn 23796 377 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;