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contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJEB66218" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 29 ✖

bioproject 1

  • PRJEB66218 · 29 ✖

analysis 1

  • blastn · 29 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
131538 131538 PRJEB66218_P_NODE_157161_length_236_cov_1.645714_g154731_i0 PRJEB66218 157161 236 1.645714 3.88388504 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 87.9 5.8e-13   NTclustered gi|470526027|ref|XM_004356636.1| 1257118 g154731 i0 90.769 0.275423728813559 65 6 28 0 150 214 1 65 Acanthamoeba castellanii str. Neff proteasome endopeptidase complex, archaeal, alpha subunit (ACA1_174500), partial mRNA blastn 65 87.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
131792 131792 PRJEB66218_P_NODE_171681_length_226_cov_1.575758_g169251_i0 PRJEB66218 171681 226 1.575758 3.56121308 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.006   NTclustered gi|470441974|ref|XM_004339429.1| 1257118 g169251 i0 94.286 0.154867256637168 35 2 15 0 44 78 953 919 Acanthamoeba castellanii str. Neff protein phosphatase 2C domain containing protein (ACA1_062060), partial mRNA blastn 35 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
133130 133130 PRJEB66218_P_NODE_30801_length_659_cov_380.528428_g28483_i0 PRJEB66218 30801 659 380.528428 2507.68234052 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 1188 0   NTclustered gi|330902858|gb|JF298255.1| 1017091 g28483 i0 99.241 37.1942336874052 659 4 100 1 1 659 1239 582 Cochliopodium larifeili clone 904 18S ribosomal RNA gene, partial sequence blastn 24511 1188 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
1405270 1405270 PRJEB66218_P_NODE_118922_length_276_cov_1.813953_g116493_i0 PRJEB66218 118922 276 1.813953 5.00651028 Nolandella sp. LAK-2012 1260117 Tubulinea other_Eukaryota 220 6.57e-53   NTclustered gi|421976359|gb|JQ519496.1| 1260117 g116493 i0 83.475 12.9311594202899 236 39 86 0 5 240 537 772 Nolandella sp. LAK-2012 elongation factor 2 alpha gene, partial cds blastn 3569 220 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
1408889 1408889 PRJEB66218_P_NODE_77482_length_360_cov_3.133779_g75056_i0 PRJEB66218 77482 360 3.133779 11.2816044 Heterostelium pallidum 13642 Evosea other_Eukaryota 52.8 0.034   NTclustered gi|60117108|ref|NC_006862.1| 13642 g75056 i0 100 0.155555555555556 28 0 8 0 314 341 2169 2196 Polysphondylium pallidum mitochondrion, complete genome blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
2683220 2683220 PRJEB66218_P_NODE_3043_length_2687_cov_2.444021_g2555_i0 PRJEB66218 3043 2687 2.4440210000000002 65.67084427 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 1921 0   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g2555 i0 79.726 100.746185336807 2698 513 100 29 1 2687 4383 1709 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 270705 1921 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3958147 3958147 PRJEB66218_P_NODE_188764_length_216_cov_1.045161_g186334_i0 PRJEB66218 188764 216 1.045161 2.25754776 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 366 5.99e-97   NTclustered gi|300078498|gb|GU001160.1| 5755 g186334 i0 99.502 27.5972222222222 201 1 93 0 16 216 5741 5541 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5961 366 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5235056 5235056 PRJEB66218_P_NODE_217785_length_207_cov_0.890411_g215355_i0 PRJEB66218 217785 207 0.890411 1.84315077 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 148 2.2499999999999993e-31   NTclustered gi|470525569|ref|XM_004356569.1| 1257118 g215355 i0 83.851 0.777777777777778 161 20 76 6 50 207 802 645 Acanthamoeba castellanii str. Neff mitochondrial phosphate transporter, putative (ACA1_173800), partial mRNA blastn 161 148 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5236794 5236794 PRJEB66218_P_NODE_74665_length_369_cov_1.740260_g72240_i0 PRJEB66218 74665 369 1.74026 6.4215594 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 174 7.17e-39   NTclustered gi|470414486|ref|XM_004336646.1| 1257118 g72240 i0 78.417 16.7913279132791 278 52 74 8 1 274 2053 2326 Acanthamoeba castellanii str. Neff DNAdirected RNA polymerase, beta subunit (ACA1_125550), partial mRNA blastn 6196 174 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9058546 9058546 PRJEB66218_P_NODE_144448_length_246_cov_2.745946_g142019_i0 PRJEB66218 144448 246 2.745946 6.75502716 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 455 1.4500000000000002e-123   NTclustered gi|1914009752|gb|MT975626.1| 1017091 g142019 i0 100 97.6626016260163 246 0 100 0 1 246 399 644 Cochliopodium larifeili cytochrome C oxidase subunit 1 gene, partial cds; mitochondrial blastn 24025 455 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
9059054 9059054 PRJEB66218_P_NODE_173408_length_225_cov_1.585366_g170978_i0 PRJEB66218 173408 225 1.585366 3.5670735 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|66813365|ref|XM_635770.1| 352472 g170978 i0 100 0.826666666666667 30 0 13 0 25 54 1106 1135 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0281317) mRNA, complete cds blastn 186 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
9061562 9061562 PRJEB66218_P_NODE_77088_length_361_cov_22.313333_g74662_i0 PRJEB66218 77088 361 22.313333 80.55113213 Ripella decalvata 2047822 Discosea other_Eukaryota 207 6.899999999999999e-49   NTclustered gi|1269228419|gb|MF683544.1| 2047822 g74662 i0 77.808 96.1080332409972 365 61 99 13 1 359 1165 1515 Ripella decalvata clone 26.1.56 18S ribosomal RNA gene, partial sequence blastn 34695 207 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
11611911 11611911 PRJEB66218_P_NODE_42450_length_532_cov_6.762208_g40043_i0 PRJEB66218 42450 532 6.762208 35.97494656 Ripella sp. 1973050 Discosea other_Eukaryota 752 0   NTclustered gi|2666517890|gb|PP259001.1| 1973050 g40043 i0 92.351 100.317669172932 536 29 100 9 1 532 539 12 Ripella sp. strain CHIESE60 small subunit ribosomal RNA gene, partial sequence blastn 53369 752 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp.
12473347 12473347 PRJEB66218_P_NODE_171490_length_226_cov_1.981818_g169060_i0 PRJEB66218 171490 226 1.981818 4.47890868 Cochliopodium 313557 Discosea other_Eukaryota 324 3.86e-84   NTclustered gi|330902883|gb|JF298266.1| 1017091 g169060 i0 93.925 86.2743362831858 214 13 95 0 13 226 749 536 Cochliopodium larifeili clone 1803 actin gene, partial cds blastn 19498 324 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
12884412 12884412 PRJEB66218_P_NODE_123011_length_271_cov_0.947619_g120582_i0 PRJEB66218 123011 271 0.947619 2.56804749 Physarum polycephalum 5791 Evosea other_Eukaryota 246 1.06e-60   NTclustered gi|119552593|gb|EF140724.1| 5791 g120582 i0 83.984 46.9225092250922 256 41 94 0 3 258 139 394 Physarum polycephalum 14-3-3-like protein mRNA, complete cds blastn 12716 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
15435188 15435188 PRJEB66218_P_NODE_232633_length_204_cov_0.902098_g230203_i0 PRJEB66218 232633 204 0.902098 1.84027992 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 152 1.71e-32   NTclustered gi|470419866|ref|XM_004337190.1| 1257118 g230203 i0 82.759 16.4264705882353 174 26 84 4 33 204 6107 5936 Acanthamoeba castellanii str. Neff rapamycin binding domain containing protein (ACA1_219100), partial mRNA blastn 3351 152 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15437057 15437057 PRJEB66218_P_NODE_87293_length_334_cov_1.549451_g84866_i0 PRJEB66218 87293 334 1.549451 5.17516634 Echinostelium arboreum 318077 Evosea other_Eukaryota 368 2.7500000000000003e-97   NTclustered gi|61661536|gb|AY842032.1| 318077 g84866 i0 88.525 82.0778443113772 305 33 91 2 1 304 492 795 Echinostelium arboreum strain ATCC 66095 elongation factor 1F-alpha (EF1A) gene, partial cds blastn 27414 368 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium arboreum
16297823 16297823 PRJEB66218_P_NODE_8433_length_1537_cov_56.294038_g7186_i0 PRJEB66218 8433 1537 56.294038 865.23936406 Acanthamoeba 5754 Discosea other_Eukaryota 313 6.5600000000000005e-80   NTclustered gi|28194618|gb|AF479562.1| 29195 g7186 i0 72.604 27.4176968119714 1179 242 74 67 146 1276 1389 244 Acanthamoeba griffini strain S7 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 42141 313 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini
17984212 17984212 PRJEB66218_P_NODE_226815_length_205_cov_0.902778_g224385_i0 PRJEB66218 226815 205 0.902778 1.8506949 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 154 4.77e-33   NTclustered gi|470525983|ref|XM_004356629.1| 1257118 g224385 i0 82.386 1.30731707317073 176 31 86 0 8 183 1 176 Acanthamoeba castellanii str. Neff ribosomal protein S15, putative (ACA1_174430), partial mRNA blastn 268 154 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17984516 17984516 PRJEB66218_P_NODE_247655_length_190_cov_3.023256_g245223_i0 PRJEB66218 247655 190 3.023256 5.7441864 uncultured Soliformovum 2510342 Evosea other_Eukaryota 303 4.08e-78   NTclustered gi|1564356923|gb|MK443523.1| 2510342 g245223 i0 95.789 1.41052631578947 190 5 99 2 2 190 244 57 Uncultured Soliformovum clone OTUA345 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 268 303 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae   uncultured Soliformovum
17985867 17985867 PRJEB66218_P_NODE_75795_length_365_cov_4.437500_g73369_i0 PRJEB66218 75795 365 4.4375 16.196875 Paravannella minima 1443144 Discosea other_Eukaryota 137 9.3e-28   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g73369 i0 79.512 34.0849315068493 205 33 55 9 72 271 3129 2929 Paravannella minima mitochondrion, complete genome blastn 12441 137 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
17986342 17986342 PRJEB66218_P_NODE_95975_length_314_cov_2.284585_g93547_i0 PRJEB66218 95975 314 2.284585 7.1735969 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 217 9.85e-52   NTclustered gi|470442899|ref|XM_004339539.1| 1257118 g93547 i0 80.068 8.52547770700637 296 55 94 4 2 295 2731 3024 Acanthamoeba castellanii str. Neff splicing factor 3b subunit 1, putative (ACA1_063380), partial mRNA blastn 2677 217 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18845841 18845841 PRJEB66218_P_NODE_138355_length_252_cov_73.246073_g135926_i0 PRJEB66218 138355 252 73.246073 184.58010396 Ripella 1217112 Discosea other_Eukaryota 418 1.9599999999999994e-112   NTclustered gi|1269228348|gb|MF683473.1| 2047821 g135926 i0 96.838 100.412698412698 253 2 100 5 1 252 1566 1319 Ripella platypodia clone 21702 18S ribosomal RNA gene, partial sequence blastn 25304 418 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
20531792 20531792 PRJEB66218_P_NODE_124737_length_268_cov_2.502415_g122308_i0 PRJEB66218 124737 268 2.502415 6.7064722 Acytostelium subglobosum 361139 Evosea other_Eukaryota 147 1.09e-30   NTclustered gi|831768525|ref|XM_012896976.1| 1410327 g122308 i0 80.102 1.47388059701493 196 39 73 0 2 197 726 921 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 395 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
23082630 23082630 PRJEB66218_P_NODE_116159_length_280_cov_1.671233_g113730_i0 PRJEB66218 116159 280 1.671233 4.6794524 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 499 7.669999999999998e-137   NTclustered gi|1914009752|gb|MT975626.1| 1017091 g113730 i0 98.929 99.5214285714286 280 2 100 1 1 280 131 409 Cochliopodium larifeili cytochrome C oxidase subunit 1 gene, partial cds; mitochondrial blastn 27866 499 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
23082818 23082818 PRJEB66218_P_NODE_125079_length_268_cov_1.256039_g122650_i0 PRJEB66218 125079 268 1.256039 3.36618452 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.025   NTclustered gi|470406668|ref|XM_004335924.1| 1257118 g122650 i0 100 0.104477611940299 28 0 10 0 176 203 2955 2982 Acanthamoeba castellanii str. Neff Beige/BEACH domain containing protein (ACA1_365070), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23085198 23085198 PRJEB66218_P_NODE_38259_length_571_cov_953.519608_g35864_i0 PRJEB66218 38259 571 953.519608 5444.59696168 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 1050 0   NTclustered gi|330902855|gb|JF298253.1| 1017091 g35864 i0 99.825 49.2364273204904 571 1 100 0 1 571 1927 1357 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 28114 1050 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
24357004 24357004 PRJEB66218_P_NODE_139320_length_251_cov_7.005263_g136891_i0 PRJEB66218 139320 251 7.005263 17.58321013 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 401 1.9599999999999993e-107   NTclustered gi|62865939|gb|AY929914.1| 325077 g136891 i0 96.016 101.175298804781 251 3 100 4 1 251 816 573 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 25395 401 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
24358619 24358619 PRJEB66218_P_NODE_23680_length_785_cov_41.277624_g21499_i0 PRJEB66218 23680 785 41.277624 324.0293484 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 337 1.9399999999999993e-87   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g21499 i0 79.159 58.0904458598726 523 82 65 22 94 603 13 521 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 45601 337 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;