RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB6584" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB6584 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25659840 25659840 PRJEB6584k_S_NODE_1858_length_219_cov_2119.581522_g1837_i0 PRJEB6584 1858 219 2119.581522 4641.88353318 uncultured Methanoregula sp. 1005933 Archaea Archaea 303 4.84e-78   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g1837 i0 98.266 143.013698630137 173 3 79 0 1 173 3117727 3117899 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 31320 303 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
26068028 26068028 PRJEB6584h_S_NODE_17741_length_182_cov_2.204082_g17679_i0 PRJEB6584 17741 182 2.204082 4.01142924 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 54.7 0.004   NTclustered gi|937513727|gb|CP012850.1| 1353260 g17679 i0 96.875 3.78571428571429 32 1 18 0 50 81 1320299 1320330 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 689 54.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
26068566 26068566 PRJEB6584o_S_NODE_12509_length_248_cov_10.802817_g12401_i0 PRJEB6584 12509 248 10.802817 26.79098616 Methanothrix sp. 90426 Archaea Archaea 52.8 0.022   NTclustered gi|2133325659|gb|CP086218.1| 90426 g12401 i0 100 0.112903225806452 28 0 11 0 148 175 336595 336622 MAG: Methanothrix sp. isolate MAG 280 chromosome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;