RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB6584" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25888241 25888241 PRJEB6584o_S_NODE_77915_length_153_cov_3.016949_g77807_i0 PRJEB6584 77915 153 3.016949 4.61593197 Verrucomicrobiota 74201 Bacteria Bacteria 209 7.03e-50   NTclustered gi|183579829|emb|AM905426.1| 320771 g77807 i0 91.447 103.333333333333 152 13 99 0 1 152 1179 1028 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 15810 211 0.990521327014218 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
26024399 26024399 PRJEB6584o_S_NODE_22436_length_195_cov_3.293750_g22328_i0 PRJEB6584 22436 195 3.29375 6.4228125 Verrucomicrobiota 74201 Bacteria Bacteria 217 5.649999999999999e-52   NTclustered gi|183579829|emb|AM905426.1| 320771 g22328 i0 87.047 3.96410256410256 193 24 99 1 1 193 2034 2225 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 773 219 0.990867579908676 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
26069010 26069010 PRJEB6584o_S_NODE_25181_length_189_cov_2.493506_g25073_i0 PRJEB6584 25181 189 2.493506 4.71272634 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 148 2.01e-31   NTclustered gi|2874253690|emb|OY969416.1| 412056 g25073 i0 83.636 3.5978835978836 165 20 85 7 1 161 1316256 1316095 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 680 148 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
26069752 26069752 PRJEB6584o_S_NODE_9229_length_285_cov_2.600000_g9121_i0 PRJEB6584 9229 285 2.6 7.41 Fontisphaera persica 2974023 Bacteria Bacteria 272 1.86e-68   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g9121 i0 88.085 127.873684210526 235 21 81 6 55 284 3861308 3861076 Fontisphaera persica strain B-154 chromosome, complete genome blastn 36444 272 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;