RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB6584" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26340053 26340053 PRJEB6584d_S_NODE_9591_length_196_cov_1.701863_g9523_i0 PRJEB6584 9591 196 1.701863 3.33565148 Suberites domuncula 55567 Porifera other_Eukaryota 100 5.97e-17   NTclustered gi|61654613|gb|AY857414.1| 55567 g9523 i0 84.848 0.790816326530612 99 15 51 0 13 111 1075 1173 Suberites domuncula L3 mRNA, complete cds blastn 155 100 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Suberitidae Suberites Suberites domuncula
26341457 26341457 PRJEB6584o_S_NODE_48775_length_167_cov_1.212121_g48667_i0 PRJEB6584 48775 167 1.212121 2.02424207 Isabella mirabilis 1562475 Porifera other_Eukaryota 67.6 5e-7   NTclustered gi|746815728|emb|LN624154.1| 1562475 g48667 i0 90.385 0.934131736526946 52 3 31 2 81 131 152 202 Isabella mirabilis partial 28S rRNA gene, specimen voucher G318737 blastn 156 67.6 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Tetractinellida Corallistidae Isabella Isabella mirabilis
26568032 26568032 PRJEB6584b_S_NODE_6472_length_172_cov_4.087591_g6454_i0 PRJEB6584 6472 172 4.087591 7.03065652 Metazoa 33208 Porifera other_Eukaryota 99 1.83e-16   NTclustered gi|1284883228|gb|KY825184.1| 178514 g6454 i0 79.452 14.4244186046512 146 24 84 4 17 160 3474 3333 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 2481 100 0.99 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;