RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB6584" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25524631 25524631 PRJEB6584o_S_NODE_20609_length_200_cov_11.654545_g20501_i0 PRJEB6584 20609 200 11.654545 23.30909 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.017   NTclustered gi|690021421|emb|LM529123.1| 174720 g20501 i0 100 0.14 28 0 14 0 173 200 1682 1709 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003434 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
25615950 25615950 PRJEB6584l_S_NODE_3457_length_298_cov_4.532319_g3305_i0 PRJEB6584 3457 298 4.532319 13.50631062 root 1 Root_unresolved Root_unresolved 62.1 4.6e-5   NTclustered gi|690021421|emb|LM529123.1| 174720 g3305 i0 100 11.6711409395973 33 0 11 0 266 298 1684 1716 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003434 blastn 3478 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
25887903 25887903 PRJEB6584i_S_NODE_7651_length_162_cov_1.212598_g7639_i0 PRJEB6584 7651 162 1.212598 1.96440876 Metazoa 33208 Nematoda Nematoda 119 1.31e-22   NTclustered gi|687865724|emb|LK927720.1| 6239 g7639 i0 91.765 54.1172839506173 85 7 52 0 78 162 116683 116599 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000166 blastn 8767 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26204251 26204251 PRJEB6584d_S_NODE_3278_length_302_cov_4.779026_g3210_i0 PRJEB6584 3278 302 4.779026 14.43265852 Caenorhabditis elegans 6239 Nematoda Nematoda 178 4.45e-40   NTclustered gi|1972235554|ref|NM_001025879.7| 6239 g3210 i0 92.063 45.3841059602649 126 10 42 0 1 126 1187 1312 Caenorhabditis elegans Tubulin alpha-2 chain (tba-2), mRNA blastn 13706 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26205526 26205526 PRJEB6584o_S_NODE_37038_length_174_cov_4.510791_g36930_i0 PRJEB6584 37038 174 4.510791 7.84877634 Caenorhabditis remanei 31234 Nematoda Nematoda 111 2.38e-20   NTclustered gi|2445387029|ref|XM_003106315.2| 31234 g36930 i0 85.714 13.632183908046 105 15 60 0 27 131 301 405 Caenorhabditis remanei uncharacterized protein (GCK72_020861), partial mRNA blastn 2372 111 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
26296112 26296112 PRJEB6584i_S_NODE_1974_length_229_cov_22.613402_g1962_i0 PRJEB6584 1974 229 22.613402 51.78469058 root 1 Root_unresolved Root_unresolved 58.4 4.39e-4   NTclustered gi|690021421|emb|LM529123.1| 174720 g1962 i0 100 14.471615720524 31 0 14 0 199 229 1684 1714 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003434 blastn 3314 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26340246 26340246 PRJEB6584k_S_NODE_4183_length_181_cov_2.746575_g4162_i0 PRJEB6584 4183 181 2.746575 4.97130075 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.001   NTclustered gi|690021421|emb|LM529123.1| 174720 g4162 i0 97.059 0.187845303867403 34 0 19 1 1 34 1709 1677 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003434 blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26568359 26568359 PRJEB6584o_S_NODE_2552_length_443_cov_14.551471_g2453_i0 PRJEB6584 2552 443 14.551471 64.46301653 Pristionchus 54125 Nematoda Nematoda 115 5.39e-21   NTclustered gi|150982243|gb|EF634710.1| 358043 g2453 i0 83.607 3.85553047404063 122 20 28 0 1 122 182 303 Pristionchus sp. 6 RS5101 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 1708 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 6 RS5101

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;